genome.fa.s8324.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008324.1 Hibiscus syriacus cultivar Beakdansim tig00111028_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  430640

Tables:   1   2   3   

This is table  2  of  3  ( 253 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
190261--190312	27	2.0	25	88	7	77	3	17	5	73	1.19
193547--193591	17	2.7	16	80	10	54	71	0	13	15	1.15
193617--193711	36	2.6	36	79	12	104	69	4	5	21	1.25
193869--193929	2	32.5	2	73	18	51	55	1	3	39	1.26
193869--193929	13	4.6	14	71	18	51	55	1	3	39	1.26
193875--193925	25	2.0	27	84	7	70	56	1	3	37	1.29
193908--193934	14	1.9	14	100	0	54	66	0	0	33	0.92
193928--193967	21	2.0	20	85	5	53	70	0	7	22	1.12
202389--202461	20	3.7	20	71	0	74	24	19	17	38	1.93
202443--202576	57	2.4	57	100	0	268	32	16	17	33	1.93
202982--203053	20	3.6	20	76	0	90	25	16	16	41	1.89
202977--203069	20	4.7	20	73	12	84	24	18	17	39	1.91
202977--203072	40	2.4	40	87	0	147	25	17	16	40	1.90
203267--203320	19	2.8	19	80	5	65	16	18	20	44	1.87
207338--207369	15	2.1	15	100	0	64	53	0	40	6	1.26
210466--210549	2	42.0	2	74	0	51	39	2	47	10	1.51
210472--210529	26	2.2	26	100	0	116	39	3	43	13	1.61
210484--210547	14	4.7	14	73	7	60	37	3	48	10	1.54
210466--210513	16	2.8	16	87	12	60	41	2	43	12	1.54
210480--210545	26	2.5	26	90	0	96	37	3	48	10	1.53
220581--220734	80	1.9	80	87	0	227	43	24	9	23	1.82
222816--222879	27	2.4	27	83	0	83	28	50	7	14	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
248935--248977	21	2.0	21	82	8	52	41	23	11	23	1.87
251039--251104	33	2.0	34	82	8	82	48	4	3	43	1.38
256236--256279	20	2.2	20	84	8	54	45	13	0	40	1.44
258384--258422	13	3.2	12	86	10	53	7	41	0	51	1.31
258749--258783	2	17.5	2	100	0	70	48	0	0	51	1.00
280866--280897	15	2.1	15	94	0	55	28	6	18	46	1.73
285608--285656	24	2.0	25	84	8	64	26	14	6	53	1.64
303091--303154	21	3.1	21	75	4	76	17	17	26	39	1.91
308774--308838	23	2.8	23	85	0	85	29	12	15	43	1.83
310576--310615	12	3.6	12	83	12	50	45	5	0	50	1.23
310602--310791	22	8.6	22	84	4	249	43	1	8	47	1.40
310599--310791	67	2.9	66	88	3	289	44	1	8	46	1.40
310814--310873	31	1.9	31	93	0	102	45	8	5	41	1.56
313588--313736	60	2.5	59	84	3	183	31	18	4	45	1.68
320597--320730	60	2.2	60	81	0	160	42	7	16	33	1.76
321361--321403	2	21.5	2	100	0	86	48	0	0	51	1.00
322917--322971	29	1.9	28	88	3	83	38	5	10	45	1.63
326060--326095	2	18.5	2	94	5	65	50	0	0	50	1.00
326234--326316	42	2.0	41	85	2	112	42	6	10	40	1.64
331966--332045	40	2.0	40	100	0	160	25	27	10	37	1.88
336836--336867	16	2.1	16	94	5	57	43	0	6	50	1.27
338194--338241	23	2.1	23	84	0	60	41	6	16	35	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
338153--338319	87	1.9	86	90	1	262	41	8	13	36	1.76
338360--339037	201	3.4	200	80	7	605	32	14	13	39	1.85
338337--339037	199	3.5	198	79	7	677	32	14	13	39	1.85
342379--343539	199	5.8	198	78	6	1182	31	15	14	38	1.87
342379--343539	396	2.9	396	88	4	1685	31	15	14	38	1.87
343534--343576	15	2.8	15	82	3	50	37	6	16	39	1.75
343831--343883	25	2.1	25	89	0	79	50	7	3	37	1.49
344847--344892	6	7.7	6	87	0	56	19	32	2	45	1.62
344847--344892	18	2.6	18	85	0	65	19	32	2	45	1.62
346419--347511	200	5.5	198	84	6	1241	34	15	11	38	1.84
346463--347511	397	2.6	392	84	6	1287	33	15	11	38	1.84
346419--347511	199	5.5	199	84	7	1238	34	15	11	38	1.84
347353--347660	149	2.1	149	84	4	390	36	14	11	38	1.82
347153--347858	349	2.0	343	88	3	1058	35	14	11	37	1.83
347502--347863	200	1.8	198	91	1	598	33	14	12	38	1.84
347832--347877	18	2.4	19	82	17	60	34	17	13	34	1.88
347842--347876	18	2.0	18	94	5	63	37	11	11	40	1.77
348128--348176	18	2.6	19	93	3	82	53	10	2	34	1.47
349632--349698	30	2.3	29	82	10	82	4	40	0	55	1.20
349668--349736	17	4.2	17	83	12	90	1	37	0	60	1.06
349663--349736	19	4.3	18	73	25	63	1	36	0	62	1.04
349981--350020	20	2.0	20	90	0	62	17	32	12	37	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
350100--350131	15	2.1	15	94	0	55	12	59	6	21	1.55
352337--353172	182	4.7	181	87	5	1066	26	16	14	41	1.87
353238--353348	54	2.0	55	87	5	163	35	12	8	44	1.72
360753--360803	21	2.4	21	83	6	68	23	23	13	39	1.91
360795--360845	21	2.5	21	81	6	61	39	19	25	15	1.91
360834--360928	20	4.7	20	83	7	111	33	26	18	21	1.96
360831--360908	41	1.9	41	94	0	138	37	25	17	19	1.94
360834--360948	20	5.7	20	79	9	99	34	25	18	21	1.96
361115--361158	22	2.0	22	95	0	79	20	45	15	18	1.85
361420--361457	20	1.9	20	94	0	67	10	15	21	52	1.72
362752--362799	18	2.7	18	93	0	87	27	45	12	14	1.81
363111--363208	48	2.0	48	100	0	196	32	9	15	42	1.78
363380--363446	20	3.4	20	81	2	73	38	23	22	14	1.92
363419--363510	33	2.8	33	93	0	157	47	19	18	14	1.82
363419--363515	19	5.6	19	71	22	97	46	19	19	14	1.84
363435--363493	14	3.9	14	74	20	55	49	20	16	13	1.80
363527--363585	14	3.9	14	74	20	55	11	16	22	49	1.78
363522--363601	33	2.4	33	95	0	142	12	18	21	47	1.81
363586--363640	20	2.8	19	86	8	74	18	25	21	34	1.96
363627--363666	20	2.0	20	90	5	62	25	10	27	37	1.88
364069--364135	21	3.2	21	66	6	55	23	35	20	19	1.95
364022--364135	42	2.7	41	81	5	104	22	35	19	21	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
365481--365517	14	2.6	14	86	0	56	32	0	18	48	1.49
365642--365696	14	3.6	14	73	21	56	45	21	23	9	1.80
365624--365736	33	3.4	33	92	0	181	46	21	22	9	1.80
365624--365716	19	5.4	18	68	24	67	47	21	20	10	1.80
365742--365892	19	8.7	18	69	21	83	12	23	19	44	1.85
365748--365872	33	3.8	33	90	4	198	12	23	18	46	1.82
365800--365854	14	3.6	14	73	21	56	9	23	21	45	1.80
365845--365938	20	4.7	20	72	13	68	21	20	23	35	1.96
368838--368998	64	2.5	63	84	7	182	34	18	20	26	1.95
369344--369383	22	1.9	20	85	10	53	32	2	17	47	1.61
371094--371118	12	2.1	12	100	0	50	0	28	0	72	0.86
371293--371346	24	2.2	24	90	0	81	40	20	16	22	1.91
372068--372199	41	3.2	41	76	6	142	23	18	24	33	1.97
372088--372199	20	5.6	20	82	6	109	23	19	25	32	1.98
372129--372223	41	2.3	41	83	3	111	22	20	23	34	1.96
372210--372262	20	2.7	20	100	0	106	20	20	16	41	1.90
372361--372389	13	2.2	13	100	0	58	20	17	34	27	1.95
374825--374869	2	22.5	2	100	0	90	48	0	0	51	1.00
376951--377033	42	2.0	42	92	0	139	50	9	4	34	1.56
377919--377965	18	2.7	18	80	3	60	36	8	27	27	1.86
378497--378567	28	2.6	28	95	2	126	43	35	8	12	1.73
378313--378879	254	2.2	244	82	10	678	40	18	11	29	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
382761--382817	29	1.9	30	92	3	98	61	3	1	33	1.23
383058--383201	41	3.2	45	78	13	120	52	6	4	36	1.48
383106--383215	41	2.7	41	91	1	177	54	3	5	36	1.41
388001--388057	30	1.9	30	85	7	80	38	8	14	38	1.77
402968--403090	60	2.0	61	82	4	151	34	21	4	39	1.75
402978--403106	60	2.2	60	79	8	145	35	20	5	37	1.76
403209--403488	60	4.7	60	80	9	313	40	6	20	32	1.79
403210--403488	120	2.3	120	94	0	486	40	6	20	32	1.79
405785--405827	21	2.0	21	81	0	50	27	27	27	16	1.97
406504--406564	23	2.7	23	89	0	95	22	27	24	24	2.00

Tables:   1   2   3