Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008343.1 Hibiscus syriacus cultivar Beakdansim tig00111070_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  738381

Tables:   1   2   3   4   

This is table  4  of  4  ( 404 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
636664--637446
84
9.5
84
76
7
710
23
21
25
29
1.99
636619--637446
165
5.0
165
87
1
1196
24
21
25
29
1.99
636594--637446
330
2.6
330
91
0
1370
23
21
25
29
1.99
640753--640797
19
2.4
19
85
3
65
66
11
11
11
1.45
642602--642661
30
2.0
30
83
6
77
73
3
8
15
1.20
642775--642822
18
2.6
19
87
9
64
70
6
8
14
1.31
644161--644221
29
2.0
31
84
6
81
47
1
3
47
1.28
644148--644351
75
2.8
75
79
5
193
47
5
2
44
1.41
644023--644388
37
10.1
36
71
14
211
46
6
4
43
1.48
645084--645602
191
2.7
184
80
8
562
35
17
18
28
1.93
652512--652573
2
31.0
2
100
0
124
50
0
0
50
1.00
655798--655898
36
2.9
36
94
2
170
46
4
0
48
1.23
657424--657472
25
2.0
25
95
0
89
48
8
14
28
1.72
668434--668472
20
2.0
20
100
0
78
35
15
23
25
1.94
668436--668481
20
2.3
20
92
0
74
39
15
19
26
1.91
671193--671246
20
2.8
20
80
2
65
38
14
14
31
1.87
671476--671538
11
5.9
11
69
14
51
57
3
1
38
1.24
671583--671640
14
3.9
14
76
12
53
50
27
0
22
1.50
671590--671643
14
4.1
14
77
15
62
51
25
0
22
1.48
673074--673155
11
7.3
11
75
5
65
26
8
23
41
1.83
673072--673135
33
1.9
33
87
0
92
23
10
23
42
1.86
673251--673280
16
1.9
16
93
6
53
13
3
26
56
1.52
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
675087--675181
3
31.7
3
91
0
154
35
2
0
62
1.07
676461--676494
15
2.3
15
90
5
52
17
0
5
76
0.98
678108--678154
2
23.5
2
91
0
76
48
4
0
46
1.21
687485--687523
15
2.6
14
88
8
51
43
23
0
33
1.54
687752--687822
30
2.5
29
81
6
83
16
12
8
61
1.54
690086--690110
3
8.3
3
100
0
50
36
0
0
64
0.94
691247--691313
3
22.3
3
81
6
55
2
55
0
41
1.15
691247--691313
15
4.5
15
84
3
82
2
55
0
41
1.15
691262--691313
18
2.9
18
91
0
86
0
55
0
44
0.99
697991--698472
47
10.5
47
70
11
239
37
12
17
32
1.87
697991--698471
94
5.2
92
72
11
335
37
12
17
32
1.87
698128--698280
82
1.9
82
86
2
218
40
11
18
29
1.85
698025--698374
176
2.0
176
83
4
438
36
12
19
31
1.89
698210--698482
141
1.9
141
80
4
318
38
14
15
31
1.88
701528--701967
37
12.3
35
78
12
288
45
2
6
46
1.41
701527--701855
73
4.4
73
82
10
336
46
1
6
46
1.37
701527--701936
73
5.6
74
80
11
332
45
2
6
45
1.42
701886--701972
31
2.8
30
79
13
88
39
2
8
50
1.44
703329--703388
9
6.4
9
74
12
50
6
15
0
78
0.95
703329--703388
29
2.1
29
84
6
77
6
15
0
78
0.95
703349--703418
18
4.1
17
71
20
56
7
14
1
77
1.05
709753--709792
21
1.9
21
89
0
62
50
15
10
25
1.74

Tables:   1   2   3   4

The End!