genome.fa.s8358.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008358.1 Hibiscus syriacus cultivar Beakdansim tig00111097_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  729890

Tables:   1   2   3   4   

This is table  2  of  4  ( 413 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
145870--145936	30	2.2	29	82	10	73	52	4	0	43	1.21
148424--148456	17	1.9	17	93	0	57	42	21	6	30	1.77
157010--157070	23	2.7	23	84	2	88	26	31	22	19	1.98
158659--158695	18	2.1	18	89	0	56	48	24	27	0	1.51
161980--162051	21	3.5	20	75	14	67	43	31	0	25	1.55
162241--162273	2	16.5	2	100	0	66	48	0	0	51	1.00
162477--162561	15	5.8	15	66	14	52	52	0	0	47	1.00
162668--162716	25	2.0	25	87	0	71	28	12	32	26	1.92
169324--169352	8	3.6	8	100	0	58	48	37	0	13	1.43
169556--169598	2	21.5	2	100	0	86	0	48	0	51	1.00
169926--169961	2	19.0	2	88	11	58	50	0	0	50	1.00
171287--171316	13	2.3	13	94	0	51	36	0	0	63	0.95
173370--173491	30	4.0	30	75	13	115	45	7	17	30	1.75
173370--173491	31	4.0	30	72	16	99	45	7	17	30	1.75
178403--178580	90	2.0	90	93	0	302	44	6	12	36	1.69
179628--179672	19	2.3	20	77	11	58	57	0	22	20	1.40
179749--179835	23	3.8	23	81	3	86	34	25	24	16	1.95
189299--189345	3	16.0	3	82	12	62	34	0	0	65	0.93
190737--190778	14	3.1	14	76	13	52	30	7	0	61	1.22
195894--196055	83	1.9	84	93	1	281	45	4	11	37	1.62
199131--199200	30	2.3	31	87	7	99	48	7	14	30	1.70
201873--201955	19	4.4	18	77	8	60	38	9	20	31	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
201952--202027	25	3.0	25	84	7	84	56	0	18	25	1.41
202055--202121	18	3.6	18	69	11	53	29	5	17	46	1.72
202057--202139	39	2.1	39	86	4	114	26	6	18	49	1.70
202213--202247	18	1.9	18	94	0	61	37	5	11	45	1.64
203191--203236	16	3.1	15	77	20	51	58	6	2	32	1.36
205427--205486	13	4.7	13	75	4	59	53	0	23	23	1.46
205618--205698	36	2.2	36	95	0	144	29	18	19	32	1.96
220230--220303	32	2.3	33	77	11	82	16	31	29	22	1.96
221576--221636	19	3.3	19	71	15	56	42	6	13	37	1.70
221693--221741	6	7.7	6	84	6	53	57	0	20	22	1.41
221692--221750	13	4.5	13	82	6	75	55	0	20	23	1.43
221692--221750	7	9.0	7	78	14	63	55	0	20	23	1.43
221692--221750	25	2.3	27	88	5	86	55	0	20	23	1.43
226344--226425	32	2.6	32	90	0	119	36	18	17	28	1.93
230339--230406	19	3.6	19	70	18	61	50	0	1	48	1.10
233892--234397	219	2.4	218	81	6	547	39	17	9	34	1.82
240689--240951	130	2.0	134	96	3	498	28	23	24	23	2.00
246350--246383	14	2.5	14	90	4	52	35	11	8	44	1.72
246662--246723	27	2.2	28	83	11	74	48	4	0	46	1.23
246883--246922	14	3.0	13	86	13	55	45	0	2	52	1.14
247104--247133	13	2.2	14	94	5	53	43	6	10	40	1.64
259877--259917	16	2.6	16	96	0	73	51	2	41	4	1.36
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
273367--273392	2	13.0	2	100	0	52	50	0	0	50	1.00
273893--273968	29	2.6	29	77	8	82	40	9	9	40	1.69
275172--275202	16	1.9	16	100	0	62	58	22	12	6	1.58
275267--275297	10	3.1	10	100	0	62	61	19	9	9	1.54
275281--275356	16	4.8	16	90	3	127	55	22	13	9	1.66
275281--275356	31	2.4	32	91	2	127	55	22	13	9	1.66
276275--276330	14	4.3	14	76	17	66	51	23	14	10	1.73
276265--276323	24	2.5	24	91	0	100	54	20	13	11	1.70
280361--280533	90	1.9	89	92	1	292	38	9	5	46	1.61
290420--290469	21	2.3	22	89	3	75	28	30	22	20	1.98
291021--291348	58	5.6	59	74	9	285	31	22	10	36	1.87
291024--291349	118	2.8	117	90	2	483	30	23	10	35	1.88
297766--298184	59	7.1	58	70	8	229	29	23	10	36	1.88
297752--298189	118	3.7	116	83	5	468	29	22	10	37	1.87
297906--298186	58	4.8	59	76	7	277	31	22	9	36	1.86
297752--298185	235	1.8	236	82	4	563	29	22	10	37	1.87
300935--301018	32	2.6	32	84	0	105	36	15	14	33	1.88
301767--301806	21	2.0	19	85	9	53	40	0	15	45	1.46
302758--302785	10	2.8	10	100	0	56	39	21	17	21	1.93
303189--303523	179	1.9	180	88	3	514	46	7	9	35	1.65
303670--303738	36	1.9	36	82	8	88	65	2	1	30	1.16
303674--303739	28	2.3	28	75	12	64	66	3	1	28	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
304361--304387	2	13.5	2	100	0	54	0	48	0	51	1.00
306365--306469	42	2.5	42	87	3	158	29	28	14	27	1.95
307087--307127	18	2.2	18	86	8	55	43	0	0	56	0.99
307092--307132	20	2.0	22	85	9	59	41	0	0	58	0.98
307295--307334	20	2.0	20	90	0	62	25	0	32	42	1.55
309467--309522	15	3.6	15	74	9	58	42	10	12	33	1.77
309470--309520	17	3.1	17	72	11	52	43	9	9	37	1.71
309918--309972	13	4.2	13	75	13	58	49	10	3	36	1.56
309958--310056	33	3.0	33	94	1	164	45	15	7	32	1.73
310051--310090	21	1.9	21	94	0	71	47	7	15	30	1.72
312385--312415	12	2.6	12	94	0	53	16	19	19	45	1.86
315824--315855	2	16.0	2	100	0	64	50	0	50	0	1.00
324201--324345	35	4.1	34	81	8	139	22	22	21	33	1.97
324201--324345	70	2.1	70	89	0	218	22	22	21	33	1.97
328864--329053	42	4.5	42	85	0	254	37	23	21	17	1.94
331350--331380	13	2.4	13	100	0	62	9	29	22	38	1.86
338538--339011	184	2.6	183	79	4	454	33	10	9	47	1.69
340884--340939	28	2.0	29	89	6	89	35	3	8	51	1.51
341860--341895	2	18.0	2	100	0	72	50	0	0	50	1.00
341888--341943	21	2.6	21	80	2	67	33	0	10	55	1.35
346256--346572	158	2.0	158	100	0	634	23	21	16	39	1.92
351410--351434	12	2.1	12	100	0	50	24	0	0	76	0.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
352343--352375	16	2.1	16	94	0	57	18	21	30	30	1.97
356500--356548	24	2.0	24	100	0	98	32	12	12	42	1.79
362742--362801	21	2.9	21	89	0	93	26	21	26	25	2.00
364356--364422	14	5.1	12	79	20	64	1	20	0	77	0.85
364361--364423	28	2.2	30	88	5	94	0	19	0	80	0.70
364886--364915	14	2.1	14	100	0	60	43	13	6	36	1.70
367120--367145	13	2.0	13	100	0	52	53	7	7	30	1.57
367811--367859	24	2.0	24	100	0	98	42	12	12	32	1.79
371567--371719	78	2.0	78	93	0	261	41	25	1	31	1.67
374460--374491	16	2.0	16	100	0	64	12	6	31	50	1.65
376021--376083	33	1.9	33	86	0	90	33	11	14	41	1.81
376576--376615	21	1.9	21	89	0	62	27	7	2	62	1.35
379017--379064	15	3.4	14	80	11	53	66	2	0	31	1.03
379077--379120	16	2.5	19	85	14	67	68	2	2	27	1.14
380475--380545	3	24.0	3	91	2	117	63	0	0	36	0.95
380700--381444	45	16.6	45	95	0	1337	33	19	23	23	1.97
381165--381235	20	3.3	20	65	24	54	29	19	28	22	1.98
382123--382167	22	2.0	22	95	0	81	37	13	13	35	1.84
386532--386581	17	3.0	16	85	8	64	0	22	0	78	0.76
391935--391972	2	19.0	2	100	0	76	50	0	0	50	1.00
393488--393538	22	2.3	22	89	0	75	9	31	29	29	1.89
393684--393743	3	20.0	3	83	6	77	60	0	0	40	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
395896--396325	213	2.0	213	94	0	754	43	15	24	16	1.86
401952--402009	31	1.9	31	85	3	82	36	10	17	36	1.84
408385--408571	81	2.4	81	94	5	332	28	20	13	36	1.91
411874--412050	31	5.7	30	77	10	151	29	31	26	12	1.93
411881--412050	62	2.7	62	84	3	209	30	31	25	12	1.92
418041--418078	20	1.9	20	88	0	58	21	26	10	42	1.85
423000--423117	12	10.5	11	67	20	57	19	10	16	54	1.70
423005--423128	24	5.4	24	75	13	118	18	10	16	54	1.69
423031--423066	18	1.9	18	88	5	54	25	8	13	52	1.68
423000--423107	54	2.0	54	81	13	125	19	10	15	54	1.69

Tables:   1   2   3   4