Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008358.1 Hibiscus syriacus cultivar Beakdansim tig00111097_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  729890

Tables:   1   2   3   4   

This is table  4  of  4  ( 413 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
620081--620201
36
3.4
36
80
5
149
29
19
10
40
1.85
619951--620532
134
4.3
134
92
1
916
28
19
10
40
1.86
620216--620323
36
3.1
35
83
7
125
26
19
10
43
1.83
620350--620469
36
3.4
34
78
10
111
30
20
10
39
1.85
620015--620623
65
9.1
66
70
18
336
29
19
10
40
1.85
620432--620643
67
3.2
66
79
10
211
29
19
11
39
1.87
621339--621390
2
28.5
2
78
18
60
48
1
0
50
1.12
621335--621392
8
6.6
9
81
13
59
46
1
0
51
1.11
622614--622657
14
3.2
13
87
9
61
18
6
0
75
1.02
631805--631846
3
14.0
3
82
9
50
2
30
4
61
1.29
635154--635210
30
1.9
30
96
3
107
31
5
17
45
1.71
635322--635346
13
1.9
13
100
0
50
16
40
20
24
1.91
635291--635348
21
2.8
21
89
0
89
18
37
20
22
1.94
635293--635465
20
8.8
20
70
15
65
25
31
17
25
1.97
636756--636803
19
2.5
20
86
3
62
50
6
14
29
1.67
636811--636854
23
2.0
22
86
4
61
50
4
18
27
1.66
638059--638115
30
1.9
30
96
3
107
31
5
17
45
1.71
638198--638284
8
12.0
8
69
22
50
26
32
16
25
1.96
638333--638378
20
2.2
21
88
3
67
21
30
17
30
1.96
639142--639174
2
16.5
2
93
0
57
48
0
3
48
1.17
647715--647788
31
2.4
31
80
6
80
40
8
8
43
1.64
658146--658249
22
4.7
22
80
9
88
37
24
16
22
1.93
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
658499--658551
21
2.7
21
88
8
76
26
20
20
32
1.98
660242--660266
13
1.9
13
100
0
50
56
0
0
44
0.99
660645--660671
13
2.1
13
100
0
54
7
7
7
77
1.12
660665--660710
22
2.0
23
87
4
67
21
2
6
69
1.22
662707--662731
3
8.3
3
100
0
50
68
0
32
0
0.90
665898--666166
135
2.0
135
91
0
430
32
17
20
29
1.96
673524--673548
2
12.5
2
100
0
50
52
0
0
48
1.00
677435--677566
66
2.0
65
98
1
255
21
9
24
44
1.81
677922--677965
21
2.2
20
87
4
61
31
27
25
15
1.96
678767--678847
31
2.6
31
92
0
126
19
18
22
39
1.92
679740--679773
16
2.1
16
100
0
68
41
0
26
32
1.56
681646--681685
17
2.4
17
87
4
55
32
0
22
45
1.53
682574--682618
21
2.1
21
87
0
63
31
28
24
15
1.96
683431--683541
31
3.6
31
91
0
177
17
18
24
39
1.92
683431--683555
62
2.0
62
85
3
171
20
18
23
38
1.93
686276--686360
33
2.6
33
84
0
98
25
31
7
35
1.83
689039--689152
7
16.3
7
99
0
219
0
41
0
58
0.98
689404--689453
24
2.1
24
85
7
66
24
2
14
60
1.45
696239--696281
20
2.1
21
87
8
63
13
16
0
69
1.19
700440--700624
96
1.9
96
79
8
207
39
10
9
41
1.71
702064--702108
20
2.3
19
84
3
54
35
0
2
62
1.08
702059--702114
29
2.0
30
83
13
75
37
0
1
60
1.07
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
702107--702205
3
32.7
3
91
2
162
62
0
3
34
1.11
702521--703042
225
2.3
226
96
1
951
28
18
14
38
1.90
702521--703042
113
4.6
113
96
0
951
28
18
14
38
1.90
703794--704332
250
2.2
249
96
1
990
36
21
13
27
1.92
703794--704344
83
6.6
83
96
0
971
36
21
13
27
1.92
705011--705056
19
2.7
16
83
10
56
54
6
4
34
1.46
718191--718235
20
2.3
19
84
3
54
35
0
2
62
1.08
718186--718241
29
2.0
30
83
13
75
37
0
1
60
1.07
718234--718346
3
37.7
3
90
0
163
60
0
3
36
1.14

Tables:   1   2   3   4

The End!