genome.fa.s8359.2.7.7.80.10.50.1000.6.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008359.1 Hibiscus syriacus cultivar Beakdansim tig00111098_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1252926

Tables:   1   2   3   4   5   6   

This is table  6  of  6  ( 669 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1089889--1089968	31	2.6	31	86	4	108	22	20	23	33	1.97
1092717--1092761	21	2.1	21	87	0	63	31	28	24	15	1.96
1093626--1093745	31	4.0	30	88	7	172	22	20	21	35	1.96
1093626--1093745	60	2.0	61	88	4	181	22	20	21	35	1.96
1096630--1096676	23	2.0	23	95	0	85	25	17	23	34	1.96
1099364--1099445	2	43.0	2	76	22	79	50	4	0	45	1.23
1101492--1101542	25	2.0	25	88	7	77	13	17	39	29	1.88
1101941--1102074	59	2.2	60	84	1	162	34	20	20	25	1.96
1102164--1102623	75	6.2	74	85	6	487	40	12	16	31	1.85
1102218--1102623	74	5.5	73	88	4	539	39	12	16	31	1.86
1102164--1102604	149	3.0	145	84	6	525	39	12	16	31	1.85
1102218--1102627	149	2.8	149	86	5	562	39	12	16	31	1.86
1102533--1103027	74	6.7	74	85	3	373	40	13	15	29	1.87
1102218--1102701	149	3.3	148	81	6	534	39	12	16	31	1.86
1102236--1103117	223	4.0	223	76	9	575	39	13	16	30	1.86
1102280--1103112	335	2.5	333	88	3	1201	39	12	16	31	1.86
1102569--1102997	148	2.9	147	85	4	533	39	13	15	30	1.87
1102637--1103032	148	2.7	149	88	4	563	41	14	15	29	1.86
1105347--1105380	14	2.4	14	90	9	52	41	2	14	41	1.61
1112557--1112612	20	2.8	20	80	17	71	33	32	8	25	1.87
1113925--1114071	75	2.0	75	93	2	253	51	25	2	20	1.61
1117280--1117535	138	1.9	138	97	0	485	33	17	21	27	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1131672--1131706	2	18.0	2	94	5	63	0	48	0	51	1.00
1132329--1132362	17	2.0	17	88	0	50	41	0	0	58	0.98
1132395--1132428	17	2.0	17	100	0	68	41	11	0	47	1.40
1134032--1134076	23	2.0	23	86	0	63	35	2	0	62	1.08
1134032--1134084	24	2.2	24	86	3	70	35	1	0	62	1.06
1138011--1138078	34	2.0	34	91	0	109	33	16	5	44	1.72
1148885--1148954	17	3.5	22	61	25	55	54	4	1	40	1.29
1148878--1148948	37	2.0	36	88	5	108	49	4	1	45	1.30
1153963--1154012	20	2.5	20	96	0	91	48	14	16	22	1.81
1154424--1154455	2	16.0	2	100	0	64	50	0	50	0	1.00
1155981--1156015	16	2.2	16	89	0	52	28	2	2	65	1.21
1166555--1167127	87	6.7	86	69	13	249	48	6	19	26	1.72
1166774--1167127	43	8.5	42	73	12	275	50	5	18	26	1.69
1168715--1168810	42	2.3	43	90	1	149	46	8	8	36	1.64
1171405--1171457	3	18.0	3	77	11	56	28	3	1	66	1.20
1171411--1171452	23	2.0	22	86	13	61	26	4	2	66	1.23
1171553--1171652	25	4.0	25	94	3	175	37	21	15	27	1.92
1173174--1173212	16	2.4	17	86	4	53	20	0	5	74	1.01
1185824--1186192	43	8.5	43	70	12	252	26	29	20	24	1.99
1185827--1186113	89	3.2	89	96	1	497	26	28	20	25	1.99
1186451--1186503	3	18.0	3	77	11	56	28	3	1	66	1.20
1186457--1186498	23	2.0	22	86	13	61	26	4	2	66	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1186611--1186710	25	4.0	25	94	3	175	37	21	15	27	1.92
1189411--1189492	2	41.0	2	100	0	164	50	0	0	50	1.00
1193439--1193468	14	2.1	14	100	0	60	20	0	6	73	1.05
1198407--1198449	22	1.9	23	85	4	61	48	0	0	51	1.00
1200430--1200482	24	2.2	24	93	3	90	11	9	16	62	1.54
1200435--1200494	13	4.8	13	72	15	54	11	10	16	61	1.55
1200430--1200516	37	2.4	37	80	0	102	11	12	17	58	1.62
1200449--1200523	14	5.7	14	71	17	63	10	14	17	57	1.65
1207660--1207713	19	2.8	20	85	2	74	37	31	11	20	1.88
1207744--1207851	40	2.7	40	81	2	110	29	24	12	34	1.91
1207784--1207851	20	3.4	20	80	8	84	29	23	13	33	1.93
1208008--1208045	16	2.5	15	84	12	51	28	5	0	65	1.14
1208637--1208670	12	2.8	12	90	0	50	55	29	0	14	1.40
1208796--1208849	24	2.2	24	93	0	90	20	18	20	40	1.91
1212931--1213064	21	6.4	21	80	1	117	26	19	33	20	1.97
1213478--1213527	21	2.4	21	86	0	73	34	30	14	22	1.93
1215074--1215107	14	2.4	14	90	0	50	11	17	23	47	1.81
1215088--1215126	20	2.0	20	100	0	78	15	12	20	51	1.76
1215090--1215133	20	2.2	20	91	0	70	15	13	20	50	1.78
1215343--1215385	22	1.9	23	85	4	61	72	2	0	25	0.97
1215673--1215720	19	2.5	20	82	3	62	20	10	22	45	1.81
1222500--1222559	31	1.9	32	89	3	95	46	0	18	35	1.49
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1243392--1243566	95	1.8	95	92	0	296	18	17	18	45	1.85
1244274--1244334	2	30.5	2	100	0	122	50	0	0	49	1.00
1250385--1250418	16	2.1	16	94	0	59	32	8	26	32	1.87

Tables:   1   2   3   4   5   6

The End!