genome.fa.s8371.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008371.1 Hibiscus syriacus cultivar Beakdansim tig00111127_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  546649

Tables:   1   2   3   

This is table  1  of  3  ( 266 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
288--330	21	2.0	21	86	0	59	30	27	25	16	1.97
310--460	66	2.3	67	86	4	198	28	27	26	17	1.97
818--877	30	2.0	31	86	3	86	36	6	21	35	1.80
1097--1141	22	2.0	22	100	0	90	20	26	26	26	1.99
1097--1149	22	2.4	22	93	0	79	20	24	24	30	1.99
1744--1786	23	1.9	22	86	13	61	62	4	4	27	1.35
4831--4902	21	3.5	21	85	7	76	34	20	20	23	1.96
4964--5017	21	2.6	21	91	5	83	38	20	20	20	1.93
7295--7350	2	28.0	2	100	0	112	50	0	0	50	1.00
9901--9940	19	2.1	19	85	0	53	40	2	2	55	1.27
13148--13208	30	2.0	30	100	0	122	37	6	6	49	1.55
18209--18684	238	2.0	238	94	0	844	34	19	8	37	1.82
26780--26810	3	10.3	3	100	0	62	32	35	0	32	1.58
29867--30353	245	2.0	245	91	0	787	35	16	18	29	1.92
31895--31940	8	5.8	8	89	0	56	21	6	71	0	1.08
31903--31956	4	12.8	4	80	7	54	25	3	70	0	1.04
32941--32991	17	3.1	17	83	8	61	58	0	0	41	0.98
33572--33597	13	2.0	13	100	0	52	30	15	15	38	1.88
37087--37275	102	1.8	102	85	5	265	30	12	21	35	1.90
39721--39838	32	3.7	31	78	11	132	33	17	16	32	1.93
39701--39872	31	5.5	31	77	10	179	31	18	18	32	1.94
39701--39866	63	2.7	63	93	0	280	32	18	17	31	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41277--41308	13	2.5	13	100	0	64	53	12	18	15	1.73
41722--41874	45	3.4	45	91	2	236	30	25	6	37	1.81
41956--42070	61	1.9	61	87	3	169	32	28	16	22	1.96
44661--44740	34	2.5	31	77	13	90	57	12	10	20	1.63
45868--45941	33	2.2	33	77	15	82	47	0	2	50	1.15
45903--46008	42	2.7	38	74	16	110	49	1	0	48	1.18
45683--46333	327	2.0	328	90	3	1044	45	4	3	46	1.42
46119--46173	22	2.4	23	79	14	60	45	1	0	52	1.11
46135--46189	14	3.9	14	79	13	51	41	3	0	54	1.18
46551--46634	14	6.1	14	69	10	57	52	2	0	45	1.13
47221--47270	22	2.3	21	86	3	73	22	6	14	58	1.58
50891--50931	18	2.3	18	87	8	57	39	29	12	19	1.88
60015--60048	17	2.1	16	94	5	59	76	5	2	14	1.09
61933--61986	23	2.3	25	78	18	62	38	14	3	42	1.64
63308--63359	25	2.0	27	85	7	72	38	19	0	42	1.51
65969--66001	15	2.1	17	88	11	52	33	12	6	48	1.65
66905--66987	42	2.0	42	85	0	112	31	7	21	39	1.81
67143--67200	27	2.1	27	83	0	71	41	3	0	55	1.17
80637--80670	2	17.0	2	100	0	68	50	0	0	50	1.00
82193--82268	31	2.5	30	89	4	116	28	28	13	28	1.94
83656--83726	24	3.0	22	76	9	61	38	2	9	49	1.51
89506--89540	5	7.0	5	93	0	61	37	22	20	20	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
95871--95899	2	14.5	2	100	0	58	48	0	0	51	1.00
100155--100222	31	2.2	31	82	12	79	38	11	29	20	1.88
102118--102296	64	2.8	64	86	1	234	29	17	22	30	1.97
102138--102325	64	2.9	63	81	6	164	29	17	21	31	1.96
103778--103865	23	3.9	22	75	10	79	29	20	23	26	1.99
103782--103878	44	2.2	44	83	7	117	29	19	23	26	1.98
104701--104731	15	2.1	15	93	0	53	64	6	6	22	1.40
106908--106997	19	4.7	19	98	0	171	16	15	35	32	1.91
107089--107126	20	1.9	20	94	0	67	18	15	34	31	1.92
120039--120093	26	2.1	26	80	12	60	34	0	1	63	1.05
120259--120288	10	3.0	10	95	0	51	46	0	0	53	1.00
123866--123931	24	2.8	24	74	2	71	24	25	21	28	1.99
124767--124818	21	2.6	20	85	8	70	28	19	7	44	1.78
124767--124826	21	2.9	22	72	20	58	33	18	6	41	1.76
128884--128919	18	2.0	18	88	0	54	52	0	25	22	1.47
132233--132289	15	3.7	15	75	9	60	22	33	29	14	1.93
132233--132300	32	2.1	32	88	0	100	23	32	29	14	1.94
138177--138233	27	2.0	27	86	6	78	50	17	3	28	1.62
140927--140972	24	2.0	23	91	8	76	30	8	13	47	1.72
141796--141851	29	1.9	29	85	7	78	57	1	5	35	1.32
141801--141859	29	2.1	28	80	3	64	62	1	3	32	1.21
141946--142281	167	2.0	168	98	1	656	29	28	13	28	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
144224--144282	24	2.5	23	78	10	66	28	5	3	62	1.32
149356--149443	41	2.1	42	93	6	151	34	7	26	31	1.85
152144--152223	40	2.0	41	95	4	146	20	30	15	35	1.93
155292--155349	27	2.2	26	96	3	107	31	27	6	34	1.83
155321--155766	105	4.3	105	86	5	613	32	25	17	24	1.97
157325--157404	30	2.5	34	76	19	82	22	6	1	70	1.17
157851--157893	23	1.9	23	85	4	61	27	6	2	62	1.33
158632--158675	22	2.0	22	100	0	88	36	9	13	40	1.76
158993--159033	18	2.4	17	84	11	57	31	12	26	29	1.92
168727--168890	33	4.7	34	79	14	165	46	17	21	14	1.84
168741--168928	19	10.7	19	76	18	201	45	17	21	15	1.86
168741--168890	72	2.1	70	91	4	239	46	17	20	15	1.84
168832--168909	14	4.8	15	71	22	52	43	19	24	12	1.86
168727--168928	51	3.9	52	83	11	263	45	17	21	15	1.86
168794--168922	33	3.8	33	71	17	111	45	17	21	14	1.85
168937--169034	19	5.4	19	84	13	143	14	22	17	45	1.84
168918--169034	53	2.2	53	96	1	218	13	24	17	43	1.86
169141--169177	14	2.6	14	91	0	65	45	21	0	32	1.52
171149--171205	14	3.7	14	77	20	60	45	22	21	10	1.82
171130--171222	33	2.8	33	95	0	168	47	21	20	10	1.80
171093--171227	19	7.6	19	76	16	128	45	23	19	11	1.82
171223--171350	19	7.3	19	73	19	116	8	17	28	45	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
171223--171312	32	2.8	33	94	1	155	7	18	28	44	1.78
171398--172138	184	4.0	186	97	2	1417	46	19	12	21	1.83
171398--172138	93	8.1	93	97	1	1417	46	19	12	21	1.83
173829--173918	14	5.7	14	69	23	63	44	22	23	10	1.82
173821--173935	33	3.5	33	97	0	221	46	20	22	10	1.80
173843--173940	19	5.7	19	69	22	90	44	21	22	11	1.83
173952--174041	14	5.7	14	72	23	72	8	24	22	44	1.81
173963--174098	19	7.6	19	74	17	139	11	24	19	44	1.83
173936--174098	33	4.7	33	90	6	218	10	23	21	44	1.83
174177--174247	33	2.2	33	92	0	115	47	18	22	11	1.80
174426--174480	22	2.5	22	81	0	74	20	16	40	23	1.91
174630--174780	20	7.5	20	80	7	162	18	17	26	37	1.93
174630--174780	40	3.8	40	83	6	180	18	17	26	37	1.93
174773--174870	21	4.7	21	79	5	72	27	15	22	34	1.94
176529--176658	64	2.0	65	96	3	244	42	12	24	20	1.87
177216--177471	87	3.0	86	82	4	309	45	11	10	32	1.74
177713--178184	112	4.2	112	90	1	730	44	11	10	33	1.75
177726--178170	223	2.0	224	91	0	730	44	11	11	32	1.76
178555--178613	23	2.6	23	83	0	55	42	8	15	33	1.77
178508--178707	87	2.3	87	91	0	328	41	11	14	33	1.81
178651--178698	23	2.1	23	84	0	60	37	10	20	31	1.87
178720--178946	112	2.0	113	87	2	332	44	11	10	33	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
178908--178958	23	2.3	22	80	9	59	41	5	9	43	1.62
186081--186158	31	2.5	31	100	0	156	43	11	14	30	1.80
186489--186531	22	2.0	22	86	9	61	48	0	0	51	1.00
194469--194779	159	2.0	159	94	0	550	21	18	21	37	1.94
209918--209968	20	2.6	19	87	9	68	43	25	19	11	1.85
209955--210101	39	3.8	39	85	7	187	32	27	19	20	1.96
209918--210103	59	3.2	58	82	9	202	34	27	19	18	1.95
209955--210099	19	7.5	19	83	11	158	33	27	18	20	1.96
210472--210542	33	2.2	33	94	0	124	11	23	16	47	1.79
210678--210733	14	3.7	14	70	25	51	42	23	25	8	1.82

Tables:   1   2   3