genome.fa.s8371.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008371.1 Hibiscus syriacus cultivar Beakdansim tig00111127_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  546649

Tables:   1   2   3   

This is table  3  of  3  ( 266 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
463739--463851	49	2.2	49	81	10	122	61	1	0	35	1.12
463965--463989	11	2.3	11	100	0	50	44	8	8	40	1.63
464019--464066	25	1.9	25	87	8	71	41	8	2	47	1.45
463878--464152	37	7.4	37	75	10	195	45	5	4	45	1.45
465565--465625	28	2.1	29	90	6	106	22	19	9	47	1.79
468322--468386	27	2.4	27	89	0	94	43	13	12	30	1.81
477182--477285	45	2.3	45	83	0	118	13	23	13	50	1.77
477201--477286	45	1.9	45	90	0	136	13	23	12	50	1.77
480957--481011	27	2.0	27	89	6	85	54	7	7	30	1.55
483127--483185	29	2.0	29	100	0	118	23	13	13	49	1.78
487809--487867	29	2.0	29	100	0	118	23	13	13	49	1.78
503939--504194	131	1.9	132	88	0	379	41	17	7	33	1.79
509492--509679	90	2.1	88	94	2	322	23	14	26	36	1.93
511387--511547	64	2.5	63	85	7	191	33	18	21	27	1.96
513059--513128	18	3.6	19	82	14	90	22	24	30	22	1.99
514067--514728	125	5.2	127	78	10	625	38	17	10	33	1.83
515260--515581	132	2.5	130	85	3	405	37	16	10	35	1.83
521996--522081	41	2.1	41	89	4	129	48	16	11	23	1.78
525506--525580	35	2.1	35	92	0	123	49	16	16	18	1.80
541410--541463	20	2.7	20	77	11	74	27	31	14	25	1.95
541470--541536	21	3.2	21	85	2	82	26	25	17	29	1.98
541507--541551	20	2.2	20	96	0	81	40	24	17	17	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
541683--541722	20	2.0	20	95	0	71	25	47	10	17	1.78
541934--541995	19	3.2	19	93	2	97	45	22	17	14	1.85
544128--544183	21	2.7	21	75	10	69	26	33	14	25	1.94
544131--544213	42	2.0	42	83	9	107	26	34	16	21	1.95

Tables:   1   2   3

The End!