genome.fa.s8371.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008371.1 Hibiscus syriacus cultivar Beakdansim tig00111127_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  546649

Tables:   1   2   3   

This is table  2  of  3  ( 266 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
210676--210749	32	2.3	32	92	2	121	45	24	21	8	1.78
210775--210836	21	3.0	21	81	9	92	9	25	16	48	1.76
210774--210829	19	2.8	20	84	10	78	10	26	17	44	1.82
212502--212800	89	3.4	92	89	8	460	21	13	18	46	1.83
212912--212968	14	3.7	14	72	20	51	43	24	22	8	1.81
212926--213017	14	5.4	19	69	27	71	46	28	17	7	1.75
212910--213017	33	3.3	33	90	3	164	47	26	18	7	1.75
213013--213166	19	8.6	19	73	14	130	11	20	22	45	1.83
213018--213148	33	3.8	33	82	9	172	10	21	21	46	1.81
214487--214618	64	2.0	65	98	1	257	38	17	19	24	1.93
215250--215285	14	2.6	14	95	0	63	33	0	22	44	1.53
215476--215664	19	10.7	19	74	21	187	14	22	17	44	1.85
215482--215664	52	3.5	53	93	3	309	14	22	17	45	1.84
218142--218195	24	2.2	24	87	6	74	40	20	14	24	1.90
218158--218209	24	2.2	24	82	0	59	38	21	15	25	1.92
218873--219085	20	10.4	20	81	6	194	19	17	25	37	1.93
219053--219150	21	4.8	20	75	10	81	21	19	20	38	1.93
219053--219151	42	2.4	43	77	11	100	21	19	21	38	1.94
220710--220736	2	13.5	2	100	0	54	48	0	0	51	1.00
221108--221132	11	2.3	11	100	0	50	20	8	8	64	1.46
229177--229228	20	2.6	20	84	6	61	40	11	17	30	1.85
232642--233924	639	2.0	640	98	0	2496	33	25	12	27	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
239560--239599	20	2.0	21	85	5	55	27	17	20	35	1.95
240260--240370	55	2.0	55	100	0	222	41	19	14	24	1.89
251493--251542	20	2.5	20	90	0	73	48	26	12	14	1.78
252880--252908	2	14.5	2	100	0	58	0	48	0	51	1.00
256012--256070	30	1.9	31	93	3	102	28	16	15	38	1.89
256779--256837	29	2.0	29	96	0	109	23	11	13	50	1.74
261440--261498	29	2.0	29	93	6	102	23	13	13	49	1.78
276542--276586	22	2.0	22	86	8	63	57	0	0	42	0.98
278028--278088	3	20.3	3	86	6	88	60	0	0	39	0.97
278028--278099	12	6.0	12	85	6	92	58	0	1	40	1.07
280889--280930	16	2.7	15	76	20	50	50	0	0	50	1.00
281009--281049	18	2.1	18	86	13	55	58	0	4	36	1.20
287010--287051	21	2.0	21	86	9	59	50	0	7	42	1.30
287266--287370	30	3.4	30	78	10	106	40	4	0	54	1.28
287266--287365	31	3.3	30	78	12	98	41	5	1	53	1.30
288591--288702	31	3.7	31	78	3	111	41	2	9	46	1.51
289471--289499	14	2.1	14	100	0	58	13	0	44	41	1.44
289572--289644	20	3.7	20	68	24	57	49	0	0	50	1.00
289567--289631	23	2.9	23	86	8	82	53	0	0	46	1.00
289590--289640	11	4.7	11	76	11	52	52	0	0	47	1.00
289571--289686	24	4.7	25	72	17	66	48	1	1	48	1.22
289572--289697	14	9.7	14	67	22	53	48	1	1	48	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
290826--290864	20	1.9	20	84	5	51	51	2	7	38	1.44
290858--290905	11	4.4	11	81	0	60	58	2	0	39	1.10
290856--290906	22	2.3	22	93	0	84	54	1	0	43	1.11
295195--295307	56	2.0	56	98	0	217	20	11	21	46	1.81
300193--300303	56	2.0	56	94	0	195	20	9	20	49	1.76
303171--303225	2	27.5	2	82	14	69	50	5	0	43	1.25
303173--303225	20	2.7	20	93	0	97	50	5	0	43	1.25
303413--303440	7	4.0	7	100	0	56	42	0	14	42	1.45
307102--307142	21	2.0	21	85	9	57	53	17	0	29	1.44
308379--308436	20	2.7	20	86	10	71	25	24	20	29	1.99
308424--308561	64	2.2	64	83	10	167	23	23	19	32	1.97
309971--310010	21	1.9	21	94	0	71	30	22	7	40	1.81
311246--311273	2	14.0	2	100	0	56	50	0	0	50	1.00
316153--316194	20	2.0	21	86	4	59	21	4	9	64	1.42
321914--321999	43	2.0	43	100	0	172	30	13	13	41	1.84
331995--332019	12	2.1	12	100	0	50	28	16	16	40	1.89
361533--361573	20	2.1	19	86	4	55	48	4	4	41	1.46
365975--366033	27	2.1	28	81	9	68	37	3	0	59	1.14
369324--369930	256	2.4	251	86	9	835	27	12	19	40	1.88
372241--372278	19	2.0	19	100	0	76	10	21	10	57	1.61
377790--377849	20	3.0	21	90	7	97	23	36	10	30	1.87
379918--379964	21	2.2	21	88	7	69	21	23	17	38	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
379954--380005	21	2.5	21	84	3	61	36	17	23	23	1.95
379939--380148	41	5.1	41	68	7	113	32	20	18	28	1.96
380025--380081	20	2.8	21	75	5	62	22	21	14	42	1.88
380015--380087	21	3.5	21	75	3	67	24	21	16	36	1.94
380077--380168	20	4.6	20	82	2	121	39	20	20	19	1.93
380077--380168	41	2.3	40	86	1	121	39	20	20	19	1.93
380694--380747	19	2.8	20	82	2	74	46	22	18	12	1.83
380796--380851	14	3.6	14	74	21	58	8	25	23	42	1.82
380779--380860	33	2.5	33	93	0	137	12	23	19	45	1.84
381726--381750	12	2.1	12	100	0	50	0	28	0	72	0.86
381925--381978	24	2.2	24	83	0	72	38	22	16	22	1.93
382723--382809	20	4.4	20	88	1	122	28	20	26	24	1.99
382798--382916	20	5.8	21	70	15	88	19	18	21	40	1.92
382779--382872	40	2.3	40	85	5	118	21	20	23	35	1.96
382800--382936	62	2.2	62	97	1	258	19	18	21	40	1.92
382800--382968	62	2.7	62	88	4	191	21	18	21	38	1.93
382943--382995	21	2.5	22	81	6	74	33	18	26	20	1.96
384254--384289	18	2.0	18	88	0	54	22	19	30	27	1.98
386118--386148	15	2.1	15	93	0	53	16	22	32	29	1.95
394508--394543	18	2.1	17	89	5	54	16	2	30	50	1.60
400321--400359	19	2.0	20	90	5	62	46	12	2	38	1.56
400373--400412	20	2.0	21	90	5	64	45	12	5	37	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
400317--400518	53	3.9	52	94	2	345	48	11	5	34	1.63
400317--400518	105	1.9	103	94	4	352	48	11	5	34	1.63
400426--400465	20	2.0	21	90	5	64	45	15	5	35	1.68
405054--405093	20	2.0	20	95	0	71	45	12	5	37	1.64
405107--405146	20	2.0	21	85	14	57	45	12	5	37	1.64
405160--405198	20	2.0	20	89	0	60	41	15	5	38	1.69
405050--405199	53	2.9	52	94	3	266	48	12	6	34	1.65
410312--410354	6	6.7	6	82	15	50	69	2	11	16	1.28
410325--410353	15	1.9	15	100	0	58	68	3	13	13	1.33
410395--410421	13	2.1	13	100	0	54	14	25	22	37	1.93
420348--420418	29	2.4	30	77	15	85	28	8	9	53	1.63
423213--423261	20	2.5	20	86	0	71	32	8	26	32	1.86
423139--423329	98	1.9	98	90	2	303	30	11	23	34	1.90
423206--423417	78	2.7	78	88	2	291	28	10	25	35	1.89
423289--423339	20	2.5	20	84	6	68	29	9	27	33	1.89
423373--423440	20	3.3	21	72	13	70	23	10	32	33	1.88
423611--423687	20	3.8	20	77	8	77	24	14	29	31	1.94
424367--424461	39	2.4	39	85	0	127	18	21	24	35	1.95
426871--426904	16	2.1	16	88	0	50	50	0	2	47	1.16
426948--426980	16	1.9	18	88	11	52	27	3	6	63	1.32
427449--427696	130	1.9	130	92	0	415	35	12	14	36	1.85
428093--428168	35	2.2	35	90	0	116	36	1	22	39	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
435799--435865	22	2.8	23	70	18	57	55	2	2	38	1.31
439099--439138	21	1.9	22	90	10	66	10	10	40	40	1.72
439325--439370	20	2.3	20	80	0	56	32	19	13	34	1.90
441673--441728	20	2.8	20	80	0	67	26	25	21	26	1.99
456018--456073	20	2.8	20	80	0	67	26	25	21	26	1.99
456808--456930	64	1.9	64	83	1	156	28	19	18	33	1.96
459519--459555	15	2.5	15	90	0	56	8	62	16	13	1.54
463736--463814	3	26.3	3	75	14	74	64	1	1	32	1.09
463735--463851	37	3.2	35	71	17	69	62	1	0	35	1.11
463736--463816	13	6.1	14	81	11	91	64	1	1	33	1.10

Tables:   1   2   3