genome.fa.s8391.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008391.1 Hibiscus syriacus cultivar Beakdansim tig00111156_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  685102

Tables:   1   2   3   

This is table  1  of  3  ( 352 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3412--3463	24	2.2	24	92	0	86	36	15	21	26	1.93
21670--21695	2	13.0	2	100	0	52	50	0	0	50	1.00
29587--29615	9	3.2	9	100	0	58	31	0	0	68	0.89
30478--30557	41	1.9	42	82	7	101	36	16	15	32	1.89
37481--37548	11	6.8	10	73	11	50	80	4	11	2	0.96
37485--37598	19	6.1	18	73	20	74	78	2	16	2	0.99
37516--37594	8	9.9	8	76	16	58	78	0	18	2	0.86
37494--37549	13	4.5	13	76	14	55	82	1	12	3	0.88
37515--37596	13	5.7	14	73	15	69	79	0	18	2	0.84
37515--37604	15	6.3	14	71	13	58	77	0	20	2	0.87
38236--38297	28	2.2	28	88	0	88	37	33	6	22	1.80
39614--40043	43	10.0	42	77	6	371	26	13	30	29	1.94
39612--40034	86	4.9	87	79	7	454	26	13	30	29	1.94
39614--40077	128	3.6	128	76	4	457	26	13	29	29	1.94
39613--40080	258	1.8	257	92	1	803	26	13	29	30	1.94
40165--40504	90	3.8	90	94	0	592	25	19	22	32	1.97
40623--40736	42	2.7	42	79	4	133	28	21	21	28	1.98
40856--40968	36	3.1	36	87	6	156	29	23	11	36	1.90
46606--46644	16	2.4	16	91	4	60	33	7	23	35	1.83
46606--46639	16	2.1	17	94	5	61	35	5	23	35	1.79
51663--51694	13	2.3	15	89	10	50	50	0	6	43	1.27
60955--60994	21	1.9	21	89	0	62	30	15	17	37	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61413--61496	44	1.9	44	82	0	105	27	19	21	32	1.97
64199--64252	18	3.2	18	79	15	69	31	14	0	53	1.41
64207--64235	15	1.9	15	100	0	58	37	13	0	48	1.43
64232--64280	24	2.0	25	84	11	66	38	20	0	40	1.53
65270--65484	40	5.3	40	64	17	95	34	22	19	23	1.97
65260--65730	125	3.7	125	79	7	441	35	20	19	25	1.96
66412--66463	13	3.9	13	75	20	54	26	0	0	73	0.84
66406--66463	19	2.9	19	78	14	64	25	0	0	74	0.82
66407--66451	3	14.3	3	81	9	54	28	0	0	71	0.87
66405--66459	16	3.5	16	82	9	69	27	0	0	72	0.85
71784--71825	18	2.3	19	84	12	52	59	21	0	19	1.38
71753--71807	28	1.9	29	88	3	85	60	18	3	18	1.51
74427--74479	15	3.6	15	76	2	54	64	3	9	22	1.40
74533--74610	31	2.4	33	78	12	88	65	2	8	23	1.34
74469--74716	85	2.9	83	81	5	257	65	3	11	19	1.40
74468--74716	84	2.9	84	80	7	279	65	4	11	19	1.41
76411--76517	44	2.4	44	84	3	135	35	17	16	29	1.93
76686--77000	110	2.8	110	81	7	359	25	25	15	33	1.95
77341--77381	19	2.1	19	90	4	64	34	7	2	56	1.40
78595--78647	13	4.3	12	79	9	54	62	1	16	18	1.42
78601--78647	13	3.7	13	82	2	60	61	2	14	21	1.43
80971--81156	102	1.8	104	84	4	261	31	18	17	31	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
81991--82091	50	2.0	50	96	0	184	36	26	10	25	1.89
83280--83401	3	41.7	3	80	11	137	36	3	0	60	1.13
83280--83410	36	3.5	37	82	13	171	37	3	0	59	1.13
86023--86059	17	2.2	17	90	0	56	64	0	0	35	0.94
86038--86092	2	29.5	2	85	14	82	52	0	0	47	1.00
86030--86092	23	2.8	22	83	11	74	55	0	0	44	0.99
90527--90610	3	29.3	3	90	9	140	33	0	0	66	0.92
91342--91400	21	2.7	22	73	5	66	22	23	20	33	1.97
91385--91542	20	7.9	20	85	2	156	31	22	20	25	1.98
91423--91535	60	1.9	60	88	0	172	30	25	20	23	1.98
91412--91542	40	3.3	40	83	0	172	29	24	21	24	1.99
91707--91763	22	2.6	22	85	0	78	22	40	19	17	1.91
92156--92229	20	3.7	20	83	0	76	14	14	24	45	1.83
92200--92239	20	2.0	20	90	0	62	12	10	22	55	1.67
93957--94006	18	2.8	18	93	0	91	32	18	6	44	1.74
94153--94240	20	4.4	20	91	0	131	38	26	17	18	1.92
94283--94349	20	3.5	19	86	8	91	17	19	26	35	1.94
94836--94942	21	5.1	21	74	7	92	21	34	19	24	1.96
96341--96402	14	4.3	14	73	6	52	38	0	12	48	1.42
96501--96554	20	2.7	20	88	5	74	42	25	18	12	1.86
96548--96590	20	2.2	20	83	4	52	25	20	25	27	1.99
96563--96699	34	3.9	34	75	11	139	22	19	21	35	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
96597--96804	20	11.0	20	75	12	179	25	18	22	34	1.96
96557--96759	40	5.4	40	75	12	180	25	19	21	33	1.97
96557--96739	74	2.5	74	90	0	303	24	19	21	34	1.96
96597--96813	94	2.3	94	85	1	283	25	17	22	34	1.96
96767--96813	20	2.3	20	85	0	58	27	14	21	36	1.93
96712--96855	54	2.7	54	83	0	180	26	15	21	36	1.93
96894--96922	13	2.2	13	100	0	58	41	24	6	27	1.80
99239--99275	14	2.6	14	91	4	56	5	21	21	51	1.68
99267--99305	3	13.0	3	88	0	60	0	28	0	71	0.86
99266--99305	15	2.7	15	100	0	80	0	27	0	72	0.85
99487--99533	24	2.0	24	95	0	85	36	21	21	21	1.96
100359--100401	20	2.2	20	91	0	68	23	20	27	27	1.99
100367--100406	20	2.0	20	90	0	62	27	20	25	27	1.99
100390--100439	20	2.5	20	90	0	73	28	22	14	36	1.92
100403--100445	20	2.2	20	91	0	68	27	23	16	32	1.96
101117--101269	34	4.4	34	83	9	168	47	5	2	44	1.41
101117--101244	68	1.9	68	87	6	188	46	4	3	45	1.39
105808--105847	17	2.2	17	86	8	53	62	0	7	30	1.23
113153--113182	13	2.3	13	94	0	51	53	6	10	30	1.60
116093--116197	22	4.8	22	91	0	156	29	30	22	17	1.96
116919--116977	22	2.9	19	76	16	64	25	25	20	28	1.99
117493--117522	9	3.3	9	90	0	51	56	0	43	0	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
128471--128502	12	2.8	11	90	9	55	43	0	12	43	1.42
131509--131545	20	1.9	19	89	10	58	45	10	24	18	1.81
133269--133311	6	6.8	6	82	17	52	2	13	4	79	1.00
133266--133312	19	2.5	19	93	6	78	4	12	6	76	1.12
134385--134437	15	3.6	15	73	12	56	54	5	11	28	1.58
136623--136647	2	12.5	2	100	0	50	52	0	0	48	1.00
137508--137573	3	22.7	3	75	9	57	65	3	3	28	1.23
138499--138800	102	3.0	101	81	8	344	37	11	17	32	1.86
138757--138933	67	2.7	66	81	8	200	40	13	16	28	1.87
138879--138972	36	2.6	35	80	8	100	40	15	11	31	1.84
141186--141350	44	3.8	43	83	7	206	32	22	10	34	1.89
141179--141350	88	2.0	88	88	2	256	31	21	12	34	1.90
147388--147599	111	1.9	111	99	0	415	19	18	21	40	1.91
149601--149654	25	2.2	24	75	18	58	50	5	14	29	1.66
150611--150653	11	3.8	11	78	6	50	2	11	4	81	0.93
151174--151242	3	23.7	3	80	11	72	65	0	5	28	1.16
151592--151653	20	3.1	20	88	0	97	33	14	17	33	1.90
153242--153296	15	3.8	15	78	9	60	67	1	29	1	1.11
154929--154973	21	2.1	21	83	4	54	31	13	8	46	1.74
155390--155439	21	2.4	21	100	0	100	24	28	26	22	1.99
156775--156995	103	2.2	102	85	4	293	36	10	17	35	1.85
159461--159638	44	4.0	44	79	0	167	29	19	14	35	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
159467--159638	88	2.0	88	83	2	220	29	19	13	36	1.91
166986--167125	46	3.0	46	92	0	226	21	3	20	54	1.60
167554--167579	11	2.4	11	100	0	52	38	0	0	61	0.96
167965--167991	6	4.5	6	100	0	54	0	33	0	66	0.92
170930--171003	24	3.2	24	76	14	84	51	14	6	27	1.68
174690--174732	20	2.2	19	88	12	61	67	6	9	16	1.40
180005--180057	21	2.6	20	84	3	61	20	24	28	26	1.99
182375--182418	21	2.3	18	84	11	52	43	6	15	34	1.74
190232--190285	22	2.4	23	81	9	67	51	14	5	27	1.64
191478--191749	49	5.6	49	84	2	323	30	22	11	36	1.89

Tables:   1   2   3