genome.fa.s8391.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008391.1 Hibiscus syriacus cultivar Beakdansim tig00111156_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  685102

Tables:   1   2   3   

This is table  3  of  3  ( 352 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
406470--406529	31	1.9	31	96	0	111	45	13	15	26	1.83
408577--408638	29	2.1	30	82	14	76	58	1	1	38	1.18
410140--410368	64	3.5	64	80	13	186	46	6	6	39	1.57
410212--410314	35	3.0	34	72	16	104	44	5	8	40	1.59
410210--410374	68	2.4	66	82	11	192	46	6	8	38	1.59
411917--411995	13	6.1	13	92	0	113	34	27	3	34	1.75
412304--412512	106	2.0	106	89	3	323	33	27	19	20	1.96
414633--414689	25	2.3	25	84	6	71	28	5	1	64	1.25
420010--420054	15	2.9	15	87	6	63	33	15	17	33	1.92
421210--421249	2	20.0	2	100	0	80	50	0	0	50	1.00
421290--421359	24	2.9	24	78	0	77	45	17	11	25	1.81
421265--421359	48	2.0	47	83	2	118	45	15	13	25	1.83
422078--422177	30	3.4	30	88	2	141	43	24	4	29	1.72
428504--428573	24	2.9	24	80	0	86	45	17	10	27	1.80
429297--429361	29	2.2	30	91	5	107	40	26	6	27	1.80
430654--430683	11	2.8	11	95	5	53	6	16	0	76	0.99
430915--430941	12	2.2	12	100	0	54	37	0	0	62	0.95
433385--433409	13	1.9	13	100	0	50	32	20	8	40	1.81
434751--434784	18	1.9	18	88	5	52	44	2	0	52	1.16
438150--438316	24	7.5	24	65	20	92	31	17	15	35	1.91
438148--438336	44	4.3	44	85	1	245	30	17	16	34	1.93
443837--443912	20	3.7	20	81	6	89	30	21	13	35	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
446722--446839	44	2.7	44	87	6	152	28	21	17	32	1.96
446881--446937	21	2.7	21	97	0	105	29	24	24	21	1.99
449466--449518	20	2.7	20	79	5	63	35	13	24	26	1.92
450355--450457	23	4.4	23	82	2	125	22	22	24	31	1.99
450356--450475	47	2.6	47	81	4	127	25	21	21	31	1.98
450354--450475	23	5.2	24	79	6	108	24	21	21	32	1.98
461954--462012	21	2.8	21	97	0	109	50	28	0	20	1.48
464852--465066	79	2.7	80	88	2	308	30	26	22	21	1.99
468116--468164	22	2.2	23	85	10	66	48	28	2	20	1.60
470128--470343	80	2.7	80	89	1	317	30	25	21	22	1.99
474164--474201	20	1.9	20	88	0	58	13	26	34	26	1.93
480025--480080	21	2.6	22	91	5	96	14	23	44	17	1.85
481618--481664	18	2.6	18	96	0	85	31	23	0	44	1.54
484850--484889	2	20.0	2	100	0	80	50	0	0	50	1.00
485963--486028	23	2.8	23	82	11	89	45	0	1	53	1.09
486040--486068	15	2.0	15	93	6	51	51	0	0	48	1.00
494252--494311	28	2.1	28	84	0	75	46	10	11	31	1.73
494262--494315	28	1.9	28	96	0	99	38	11	12	37	1.79
496506--496594	30	3.0	30	67	9	74	61	10	4	23	1.46
502576--502636	31	2.0	31	93	0	104	44	1	4	49	1.33
502665--503180	22	23.4	22	87	2	721	47	10	0	41	1.42
503167--503206	12	3.6	12	77	16	50	55	0	2	42	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
511405--511450	23	2.0	24	87	12	69	30	0	2	67	1.03
511411--511460	22	2.2	23	82	10	59	30	0	4	66	1.10
511411--511459	23	2.1	23	82	14	57	28	0	4	67	1.09
512648--512725	41	2.0	40	87	10	115	15	33	28	23	1.95
515257--515298	9	4.7	9	87	0	66	16	33	16	33	1.92
515267--515292	12	2.2	12	100	0	52	15	34	15	34	1.89
517073--517113	18	2.3	18	87	4	57	60	2	7	29	1.36
517295--517406	51	2.2	50	81	9	120	25	27	29	16	1.97
519831--519863	15	2.3	15	90	10	52	27	0	15	57	1.38
519853--520026	70	2.6	67	82	10	194	31	0	13	54	1.44
519924--519971	19	2.6	19	80	3	53	27	0	18	54	1.44
520626--520668	18	2.4	18	92	7	70	20	4	0	74	1.00
528451--528493	17	2.5	17	88	7	61	62	4	2	30	1.28
529289--529344	29	2.0	28	85	3	76	46	3	1	48	1.30
532619--532676	26	2.2	26	100	0	116	46	8	18	25	1.78
534087--534139	26	2.0	26	92	0	88	24	16	30	28	1.97
544297--544345	26	1.9	25	84	12	64	28	16	26	28	1.97
545195--545242	19	2.4	19	80	16	53	25	12	2	60	1.43
548330--548374	23	2.0	23	86	0	63	22	20	28	28	1.98
554147--554176	2	15.0	2	100	0	60	50	0	0	50	1.00
554615--554690	32	2.4	32	80	6	82	47	3	2	46	1.35
558855--559420	214	2.6	214	89	3	877	30	19	15	34	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
559401--560438	116	9.0	116	95	0	1819	24	18	22	34	1.96
560367--560469	36	2.9	36	83	0	134	24	18	19	37	1.94
563054--563094	11	3.6	11	83	6	55	0	24	0	75	0.80
563055--563094	17	2.4	16	87	8	53	0	25	0	75	0.81
563057--563114	25	2.5	23	78	13	64	3	27	0	68	1.05
565387--565425	6	6.5	6	88	11	62	51	15	15	17	1.77
565386--565422	13	3.0	13	88	11	60	45	16	16	21	1.84
565673--565723	21	2.4	22	80	6	68	9	21	23	45	1.82
571198--571274	32	2.4	32	82	2	84	42	6	2	48	1.42
572075--572176	32	3.2	31	72	4	80	42	7	2	47	1.47
570783--572595	915	2.0	910	88	3	2687	38	13	13	34	1.85
574239--574269	15	2.1	14	94	5	53	32	16	16	35	1.91
579259--579309	24	2.1	24	88	0	75	21	7	15	54	1.66
579265--579347	24	3.5	24	84	0	94	24	7	15	53	1.67
584555--584604	20	2.6	19	78	6	55	20	44	18	18	1.88
586986--587028	12	3.5	13	78	12	54	18	9	6	65	1.44
586985--587023	11	3.4	11	80	13	51	20	7	7	64	1.45
586963--587076	24	4.8	24	79	1	95	19	12	12	56	1.67
589577--589605	12	2.4	12	100	0	58	13	0	27	58	1.36
592259--592361	32	3.3	31	74	9	93	45	6	1	45	1.41
593804--593904	31	3.3	31	74	10	91	42	6	1	48	1.41
595159--595266	32	3.4	31	74	3	81	43	8	2	45	1.48
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
598114--598204	21	4.4	21	66	16	55	47	4	2	46	1.35
598672--598701	15	2.1	14	93	6	51	33	13	16	36	1.88
600208--600238	15	2.1	14	94	5	53	32	16	16	35	1.91
604326--604356	15	2.1	14	94	5	53	32	16	16	35	1.91
605811--605841	15	2.1	14	94	5	53	32	16	16	35	1.91
609741--609771	15	2.1	14	94	5	53	32	16	16	35	1.91
612379--612409	15	2.1	14	94	5	53	32	16	16	35	1.91
613918--613948	15	2.1	14	94	5	53	32	16	16	35	1.91
614475--614531	27	2.1	27	100	0	114	47	7	7	38	1.58
623776--623806	15	2.1	14	94	5	53	32	16	16	35	1.91
629180--629223	16	2.8	17	86	10	58	52	6	0	40	1.28
633499--633528	15	2.1	14	93	6	51	33	13	16	36	1.88
635058--635088	15	2.1	15	94	5	55	32	16	16	35	1.91
652017--652047	15	2.1	14	94	5	53	32	16	16	35	1.91
652966--653043	32	2.4	32	80	0	84	46	6	2	44	1.42
652955--653051	32	3.1	30	72	7	77	42	8	3	46	1.49
654831--654890	25	2.4	25	85	0	93	38	30	11	20	1.88
659643--659693	24	2.1	25	85	3	68	62	1	5	29	1.29
661896--661967	32	2.3	31	85	2	90	41	5	2	50	1.40
671843--671881	20	2.0	20	84	0	51	66	5	10	17	1.39
672570--672641	36	2.0	36	91	0	117	48	5	20	25	1.71
678566--678604	17	2.3	17	100	0	78	12	23	46	17	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
678600--678679	9	8.3	9	80	10	70	28	26	28	16	1.97
678606--678680	29	2.5	31	89	8	120	29	26	26	17	1.97

Tables:   1   2   3

The End!