genome.fa.s8391.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008391.1 Hibiscus syriacus cultivar Beakdansim tig00111156_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  685102

Tables:   1   2   3   

This is table  2  of  3  ( 352 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
191488--191749	98	2.7	98	88	1	382	30	22	11	36	1.89
194346--194406	29	2.1	30	79	14	74	16	19	18	45	1.85
194434--194507	29	2.5	30	80	10	82	18	10	21	48	1.78
194330--194644	101	3.1	98	75	7	274	21	20	18	39	1.93
202083--202121	17	2.3	17	90	0	60	76	2	12	7	1.09
208925--208997	29	2.5	30	82	8	96	28	23	26	21	1.99
212475--212506	15	2.1	15	94	0	55	0	21	0	78	0.76
212561--212597	19	1.9	19	89	10	58	5	24	10	59	1.52
212994--213074	3	27.0	3	82	0	99	59	1	1	38	1.13
213409--213849	113	3.9	113	94	0	769	29	18	13	38	1.89
214648--215166	83	6.3	83	90	3	805	36	22	13	27	1.92
214648--215166	248	2.1	249	89	4	816	36	22	13	27	1.92
216306--216335	13	2.3	13	100	0	60	0	13	0	86	0.57
216299--216338	21	1.9	21	90	10	64	0	15	0	85	0.61
226991--227056	24	2.9	23	77	13	73	62	1	1	34	1.14
226991--227044	21	2.4	23	81	9	67	62	1	1	33	1.16
228625--228661	19	1.9	19	89	10	58	5	24	10	59	1.52
229058--229153	3	32.0	3	82	0	120	58	0	1	40	1.05
240045--240118	37	2.0	36	84	7	96	50	4	0	45	1.20
240775--240815	21	2.0	21	95	0	73	36	7	17	39	1.77
243549--243606	28	2.2	26	90	6	89	48	6	5	39	1.52
244345--244391	24	1.9	25	86	4	69	34	4	0	61	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
244369--244476	31	3.5	30	80	1	108	41	5	0	52	1.24
244492--244568	30	2.5	31	85	8	104	50	1	7	40	1.39
244531--244580	25	2.1	24	88	7	75	50	0	8	42	1.32
244510--244613	54	1.9	54	82	3	129	45	0	11	43	1.40
244626--244836	30	7.0	30	79	6	205	53	1	9	36	1.44
244626--244824	59	3.3	60	80	7	190	53	2	8	35	1.43
244824--244868	18	2.5	19	82	10	58	40	0	15	44	1.47
245083--245116	16	2.1	16	94	0	59	67	0	0	32	0.91
245878--245918	18	2.3	19	79	12	50	34	7	2	56	1.40
250021--250207	31	6.0	31	95	1	322	37	22	19	20	1.94
251094--251138	21	2.1	21	87	0	63	15	24	28	31	1.96
260996--261029	17	2.0	17	88	0	50	58	17	11	11	1.62
261458--261772	44	7.3	44	78	2	289	31	22	13	32	1.92
261451--261754	87	3.5	88	81	3	321	30	22	13	33	1.92
261455--261775	131	2.5	130	85	5	411	31	21	13	32	1.93
262098--262154	3	19.0	3	85	0	69	40	0	1	57	1.09
265906--265947	20	2.3	19	88	12	61	45	0	0	54	0.99
266233--266266	3	11.3	3	100	0	68	32	0	0	67	0.91
269322--269389	30	2.3	30	82	5	84	48	8	13	29	1.72
270459--270939	238	2.0	238	95	0	874	36	6	22	35	1.79
272289--272420	61	2.2	61	88	2	194	26	18	28	27	1.98
277340--277385	20	2.3	20	85	3	58	36	0	23	39	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
278811--278944	61	2.2	61	86	0	178	29	17	25	27	1.98
280591--280635	20	2.2	20	84	0	63	37	26	13	22	1.91
280677--280738	19	3.3	19	77	4	72	20	27	16	35	1.94
296403--296641	92	2.6	92	88	3	331	38	9	23	29	1.85
296643--296708	33	2.1	32	86	11	91	31	21	19	27	1.97
299123--299166	3	14.3	3	90	4	70	34	0	2	63	1.07
308677--308721	14	3.2	14	80	0	54	17	28	11	42	1.84
309400--309440	17	2.4	17	95	0	73	12	12	24	51	1.73
311580--311626	23	2.0	22	100	0	76	78	0	8	12	0.95
311585--311629	7	6.1	7	85	10	63	75	0	11	13	1.05
311584--311629	15	3.1	15	81	12	67	76	0	10	13	1.03
312971--313049	41	2.0	40	84	2	104	31	25	18	24	1.98
317024--317050	2	13.5	2	100	0	54	48	0	0	51	1.00
316162--317040	434	2.0	431	93	2	1498	36	15	8	39	1.78
325451--325806	60	5.9	60	89	1	534	37	21	17	23	1.94
330251--330345	2	47.5	2	100	0	190	0	49	0	50	1.00
338383--338408	2	13.0	2	100	0	52	50	0	0	50	1.00
344926--344957	2	16.0	2	100	0	64	50	0	0	50	1.00
352633--352751	59	2.0	59	100	0	238	31	21	16	30	1.96
354344--354516	94	1.9	90	83	9	224	27	17	21	32	1.96
364671--364720	18	2.6	19	84	6	66	28	26	16	30	1.96
367246--367416	45	3.8	45	89	2	254	40	7	20	31	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
369260--369298	14	2.7	15	76	8	53	20	2	25	51	1.60
369346--369386	2	20.0	2	90	5	64	46	0	2	51	1.14
370374--370471	43	2.3	43	83	0	115	21	23	20	34	1.96
374134--374209	39	1.9	39	94	0	134	46	14	9	30	1.76
379770--379818	19	2.6	19	93	0	80	20	8	28	42	1.80
380550--380597	23	2.1	23	84	0	60	39	8	16	35	1.79
380628--380687	23	2.6	23	78	0	66	41	8	11	38	1.72
380522--380774	87	2.9	87	89	0	389	42	10	13	33	1.79
380724--380843	23	5.2	23	97	0	222	40	8	19	31	1.81
380628--380930	156	1.9	156	90	0	480	42	9	14	33	1.78
380871--380930	23	2.6	23	83	0	75	41	8	15	35	1.77
380784--381017	87	2.7	87	91	0	369	44	9	14	32	1.77
380958--381036	23	3.5	23	85	1	106	43	8	15	32	1.77
380550--381034	243	2.0	243	94	0	853	42	10	14	32	1.79
380669--380994	156	2.1	151	83	8	392	42	9	14	32	1.78
380871--381123	109	2.3	110	89	0	373	44	10	12	33	1.76
381067--381116	23	2.2	23	85	0	64	44	12	10	34	1.75
380990--381190	87	2.3	87	87	0	305	44	10	12	31	1.77
380770--381190	196	2.1	197	92	0	718	43	10	13	32	1.78
381076--381123	23	2.1	23	88	0	69	45	10	10	33	1.72
381709--381764	24	2.4	23	83	16	80	57	3	0	39	1.16
381764--382204	200	2.2	198	87	4	629	30	14	13	40	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
382307--382375	30	2.3	31	82	9	81	49	1	0	49	1.09
382419--382487	24	2.9	25	79	18	76	43	1	2	52	1.25
384346--384378	12	2.6	13	90	4	50	69	0	0	30	0.88
387250--387321	20	3.6	20	84	0	90	11	23	44	20	1.84
391115--391180	29	2.3	29	89	2	98	30	10	15	43	1.80
391678--391762	18	4.6	18	79	13	91	32	2	1	63	1.15
392357--392406	23	2.2	23	88	0	73	38	26	14	22	1.91
392421--393066	215	3.0	215	94	1	1106	29	13	8	49	1.71
395385--395420	2	18.0	2	100	0	72	50	0	0	50	1.00
397504--397529	2	13.0	2	100	0	52	50	0	0	50	1.00
397772--397881	42	3.0	34	72	20	105	51	16	4	27	1.63
397761--397853	42	2.2	42	94	0	159	52	16	3	27	1.59
397814--397902	34	2.6	34	84	7	92	52	16	3	26	1.59
398476--398604	11	12.5	11	73	18	116	27	25	20	27	1.99
398489--398560	28	2.6	27	72	14	83	27	29	18	25	1.98
398554--398595	12	3.6	12	77	6	50	26	21	23	28	1.99
398476--398640	17	8.4	20	82	13	120	29	26	18	26	1.98
398487--398641	80	1.9	79	90	1	247	30	26	17	25	1.97
398511--398644	17	7.2	17	83	11	124	29	27	16	26	1.97
400535--400640	14	6.9	14	69	21	54	22	0	28	49	1.50
400603--400640	13	2.8	14	96	4	69	21	0	26	52	1.47
400537--400645	34	3.3	34	78	16	113	22	0	29	48	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
400623--400779	27	5.9	27	69	18	78	22	3	25	48	1.67
400597--400693	34	2.9	34	77	10	92	22	1	24	51	1.54
400731--400782	14	3.8	14	82	2	52	21	1	26	50	1.59
400743--400782	21	1.9	21	94	0	71	20	0	25	55	1.44
400741--400782	7	6.0	7	85	0	57	19	0	28	52	1.46
401938--401978	14	3.1	14	76	20	52	41	0	4	53	1.22
402613--402804	74	2.6	73	85	5	251	37	7	13	42	1.71
402807--402957	2	77.5	2	69	17	77	48	2	6	42	1.43
405387--405419	16	2.1	16	94	0	57	27	12	9	51	1.69
405592--405624	16	2.0	17	94	5	59	45	6	0	48	1.27

Tables:   1   2   3