genome.fa.s8392.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008392.1 Hibiscus syriacus cultivar Beakdansim tig00111157_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  522134

Tables:   1   2   3   

This is table  2  of  3  ( 272 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
201056--201124	3	23.3	3	85	14	83	66	0	0	33	0.92
201898--201928	14	2.2	14	94	0	53	22	16	19	41	1.89
203434--203585	72	2.1	72	85	0	196	40	11	15	32	1.83
205197--205266	31	2.3	31	100	0	140	48	11	15	24	1.78
205555--205596	21	2.0	21	85	0	57	28	2	11	57	1.47
207438--207571	40	3.3	38	72	16	110	32	20	20	26	1.97
207685--207724	21	1.9	21	84	0	53	12	42	17	27	1.85
208860--208910	21	2.4	22	90	9	88	43	0	0	56	0.99
208860--208919	18	3.3	18	88	0	84	41	0	0	58	0.98
208860--208931	12	5.7	13	75	12	62	43	0	0	56	0.99
208876--208931	15	3.7	16	81	11	73	41	0	0	58	0.98
208860--208919	3	20.0	3	85	0	75	41	0	0	58	0.98
217271--217490	114	1.9	114	92	0	368	32	15	21	30	1.94
218592--218759	76	2.2	76	80	3	187	31	17	22	28	1.97
219624--219768	54	2.8	53	79	12	165	40	15	21	22	1.91
220132--220188	22	2.6	22	85	0	87	33	14	12	40	1.83
220863--221424	76	7.4	76	97	0	1043	23	19	22	34	1.96
221570--221620	21	2.4	22	90	9	88	43	0	0	56	0.99
221570--221629	18	3.3	18	88	0	84	41	0	0	58	0.98
221570--221641	12	5.7	13	75	12	62	43	0	0	56	0.99
221586--221641	15	3.7	16	81	11	73	41	0	0	58	0.98
221570--221629	3	20.0	3	85	0	75	41	0	0	58	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
222885--222909	10	2.5	10	100	0	50	12	0	0	88	0.53
223951--224005	19	3.3	19	62	32	52	32	21	10	34	1.89
223942--224005	31	2.1	31	100	0	128	32	18	10	37	1.86
223947--224023	31	2.5	31	87	4	93	35	18	10	36	1.85
224894--225273	42	8.9	43	79	4	299	27	22	16	34	1.95
224913--225246	85	4.0	85	75	8	308	26	21	16	35	1.95
224895--225246	125	2.8	128	76	8	310	27	21	16	34	1.95
226997--227150	65	2.4	65	86	4	204	32	18	21	27	1.97
237851--237903	23	2.2	24	96	3	99	62	18	0	18	1.33
249199--249242	17	2.7	17	86	6	56	75	2	6	15	1.12
251892--251940	23	2.2	23	78	14	57	34	8	20	36	1.82
255077--255138	30	2.1	30	90	0	97	11	19	24	45	1.83
258841--258961	41	3.0	41	81	6	158	14	9	32	43	1.77
258841--258961	39	3.0	40	83	4	156	14	9	32	43	1.77
262874--262917	21	2.1	21	83	8	54	27	6	4	61	1.41
266782--266888	32	3.3	32	93	2	171	18	25	26	29	1.98
266782--266939	32	5.0	31	82	9	131	20	25	23	31	1.98
268250--268325	20	3.7	20	74	19	66	30	17	28	23	1.97
269841--269901	23	2.7	23	86	0	95	18	24	27	29	1.98
276815--276870	21	2.7	21	97	0	103	25	33	23	17	1.96
277331--277371	13	3.1	13	85	3	55	36	14	4	43	1.67
277338--277375	13	3.0	13	80	3	51	34	13	2	50	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
279623--279691	17	3.9	17	73	12	59	44	8	13	33	1.74
281178--281236	21	2.5	24	76	23	70	15	16	25	42	1.88
281180--281229	21	2.4	21	93	0	82	18	18	26	38	1.93
281201--281257	31	2.0	27	83	16	71	14	19	28	38	1.90
284764--284809	19	2.4	19	100	0	92	36	10	21	30	1.88
284876--284936	30	2.0	30	90	0	95	32	22	18	26	1.97
285322--285574	47	5.4	47	95	2	433	33	19	7	39	1.79
293682--293821	72	1.9	73	86	1	201	27	11	16	45	1.81
303048--303149	43	2.4	43	98	0	195	32	11	17	38	1.86
304453--304502	19	2.6	19	81	6	66	38	0	2	60	1.09
304481--304505	11	2.3	11	100	0	50	40	0	0	60	0.97
304531--304575	22	2.0	23	82	4	56	44	2	0	53	1.13
304490--304584	30	3.1	32	77	14	87	47	4	0	48	1.21
304701--304769	29	2.4	29	82	4	77	53	0	2	43	1.15
306581--306618	2	19.5	2	94	5	69	52	0	0	47	1.00
307032--307073	2	21.0	2	100	0	84	50	0	0	50	1.00
307820--307880	31	1.9	32	83	9	81	29	6	6	57	1.49
312464--312872	209	2.0	203	83	5	509	31	14	12	41	1.83
313697--313990	37	8.6	33	69	22	116	46	3	7	43	1.47
313706--313903	63	3.1	63	77	12	208	45	3	9	41	1.53
313808--313855	25	1.9	25	91	8	80	41	4	8	45	1.53
313815--313993	37	4.9	35	78	13	141	47	2	5	45	1.37
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
313833--313993	36	4.4	37	81	12	188	47	1	4	45	1.35
320248--320962	169	4.2	169	87	1	986	33	23	19	24	1.97
320248--320962	85	8.4	85	87	3	922	33	23	19	24	1.97
320254--321045	85	9.4	85	83	5	505	33	22	18	24	1.97
321831--321901	36	2.0	36	88	5	108	42	8	8	40	1.66
321831--321930	36	2.8	35	81	11	107	43	8	9	40	1.66
321890--322155	36	7.5	36	78	14	222	43	2	7	45	1.47
321861--321996	64	2.1	67	87	4	197	41	5	11	41	1.62
321926--322158	36	6.4	36	85	7	271	43	2	7	46	1.44
323397--323440	20	2.3	18	88	7	61	18	2	2	77	0.98
323418--323446	13	2.1	14	93	6	51	13	6	3	75	1.13
323401--323473	28	2.5	28	76	12	67	17	6	2	72	1.19
330694--330746	26	2.0	26	100	0	106	22	18	15	43	1.87
340138--340243	24	4.4	24	71	7	90	49	16	16	18	1.80
341310--341384	26	2.9	26	84	7	73	28	14	17	40	1.89
341383--341442	27	2.2	28	82	14	72	21	10	18	50	1.76
342693--342763	22	3.3	22	70	16	67	25	25	28	21	1.99
342671--342767	44	2.2	43	92	5	160	24	25	26	22	2.00
351379--351440	23	2.8	22	85	9	74	22	33	25	17	1.96
354027--354070	23	2.0	23	81	4	54	50	11	2	36	1.51
360945--361007	3	21.0	3	93	0	63	44	0	33	22	1.53
360936--361007	27	2.7	27	97	0	135	47	0	33	19	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
360939--361007	24	2.9	24	95	0	120	46	0	33	20	1.51
362650--362683	17	1.9	18	88	5	52	50	0	8	41	1.34
364852--365291	29	15.2	29	72	1	229	43	10	10	35	1.75
364852--365275	87	4.9	87	88	2	579	42	11	10	35	1.75
366100--366259	70	2.3	71	83	5	218	28	20	23	28	1.99
366663--366718	18	3.0	19	87	7	71	23	26	19	30	1.98
382588--382685	31	3.1	30	78	7	106	24	13	7	55	1.63
382739--382825	30	2.9	31	84	8	81	49	9	13	27	1.73
382758--382826	30	2.3	30	94	0	120	47	10	11	30	1.73
383545--383587	16	2.6	17	88	7	70	25	2	0	72	0.97
392784--392830	16	2.9	16	75	15	51	70	2	0	27	0.99
393262--393329	35	1.9	35	90	0	109	26	8	26	38	1.85
393596--393632	17	2.2	17	86	13	51	37	8	0	54	1.30
395388--395425	20	1.9	20	94	0	67	57	0	5	36	1.21
404149--404207	26	2.2	26	93	3	100	35	10	10	44	1.72
405108--405162	28	2.0	28	82	13	69	60	1	3	34	1.25
407381--407531	49	3.1	49	60	22	109	33	16	15	33	1.91
407340--407535	97	2.0	97	100	0	392	34	16	17	31	1.92
419012--419080	29	2.4	29	92	0	111	34	27	5	31	1.81
419117--419193	31	2.5	31	91	0	118	35	12	25	25	1.92
429272--429318	18	2.6	18	90	6	69	29	31	19	19	1.96
438858--438886	10	2.9	10	100	0	58	20	0	0	79	0.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
449035--449790	105	7.2	105	96	0	1386	34	25	17	22	1.96
451716--451744	15	1.9	15	100	0	58	6	3	6	82	0.93
454999--455056	25	2.2	27	82	14	77	34	6	0	58	1.25
456967--457016	2	25.0	2	100	0	100	50	0	0	50	1.00
464419--464751	167	2.0	167	93	0	567	38	18	13	29	1.89
466104--466169	30	2.2	30	88	0	96	13	24	24	37	1.91
466144--466181	20	1.9	20	88	0	58	13	21	23	42	1.88
467059--467091	13	2.3	15	90	10	52	24	9	12	54	1.66
467152--467222	28	2.5	28	81	4	81	43	22	1	32	1.62
468958--468991	13	2.6	13	85	0	50	50	0	0	50	1.00

Tables:   1   2   3