Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008392.1 Hibiscus syriacus cultivar Beakdansim tig00111157_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  522134

Tables:   1   2   3   

This is table  3  of  3  ( 272 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
468976--469009
16
2.1
16
88
0
50
58
0
0
41
0.98
468967--469034
34
2.0
34
85
8
93
55
4
0
39
1.20
468981--469019
20
2.0
20
85
10
53
64
0
0
35
0.94
471486--471521
18
2.0
18
94
0
63
52
8
16
22
1.70
473116--473162
15
3.1
15
90
3
67
36
4
23
36
1.75
473118--473164
16
3.1
15
90
3
67
38
4
23
34
1.74
473355--473456
23
4.4
23
81
2
114
22
24
24
28
1.99
473355--473456
47
2.2
46
80
1
114
22
24
24
28
1.99
473355--473477
23
5.3
23
79
4
104
23
24
23
28
2.00
473448--473495
24
2.0
24
87
0
69
25
25
22
27
2.00
477815--477991
90
2.0
90
91
0
291
48
4
7
38
1.53
478623--478680
30
1.9
30
96
0
107
32
22
12
32
1.91
482093--482125
16
2.1
16
100
0
66
24
21
24
30
1.99
482263--482296
2
17.0
2
100
0
68
50
0
50
0
1.00
488447--489379
6
156.7
6
98
1
1817
33
0
0
66
0.92
490378--490479
32
3.2
32
80
2
125
27
25
29
17
1.98
491320--491365
22
2.1
22
91
0
74
26
19
19
34
1.96
491329--491375
22
2.1
22
96
0
85
27
21
19
31
1.97
496052--496159
24
4.5
24
75
10
87
19
16
16
47
1.83
496089--496158
12
5.8
12
76
6
61
17
14
17
51
1.77
496052--496160
48
2.3
48
82
6
123
19
16
16
47
1.83
497907--497942
14
2.5
15
86
9
56
41
0
5
52
1.24
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
498332--498376
23
2.0
23
86
0
63
26
20
17
35
1.95
501072--501159
29
3.0
29
86
0
113
20
38
29
11
1.87
501316--501390
29
2.6
29
80
0
87
14
25
40
20
1.90
502037--502113
3
26.0
3
97
2
147
33
0
0
66
0.92
509649--509700
26
2.0
26
100
0
104
46
19
11
23
1.82
517346--517383
19
2.0
20
89
5
60
50
2
26
21
1.62
520177--520219
21
2.0
21
86
0
59
30
27
25
16
1.97
520584--520655
29
2.5
29
90
0
108
37
11
12
38
1.79
520670--520727
30
1.9
30
89
0
89
36
6
22
34
1.81
520945--521011
22
3.0
22
100
0
134
19
26
26
26
1.99

Tables:   1   2   3

The End!