genome.fa.s8415.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008415.1 Hibiscus syriacus cultivar Beakdansim tig00111193_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  525802

Tables:   1   2   3   

This is table  3  of  3  ( 343 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
372167--372213	22	2.1	22	92	0	76	34	17	6	42	1.74
373677--373715	18	2.2	18	100	0	78	56	7	0	35	1.28
377431--377458	2	14.0	2	100	0	56	50	0	0	50	1.00
377458--377487	2	15.0	2	100	0	60	0	0	50	50	1.00
393954--393993	18	2.2	18	86	0	53	40	25	12	22	1.89
396592--396644	21	2.5	21	81	6	72	20	26	18	33	1.96
396654--396768	20	5.7	20	82	6	124	33	26	17	22	1.96
396652--396788	41	3.4	40	82	6	168	35	25	16	22	1.95
396955--396998	22	2.0	22	95	0	79	20	45	15	18	1.85
397261--397319	20	3.0	20	87	0	73	15	18	22	44	1.87
398639--398686	18	2.7	18	93	0	78	27	41	12	18	1.86
399231--399275	20	2.3	20	84	3	65	40	15	22	22	1.91
399239--399322	19	4.6	19	72	15	70	42	20	21	15	1.88
399336--399392	14	3.7	14	75	20	51	14	15	17	52	1.75
399329--399408	33	2.4	33	91	0	124	15	18	17	48	1.81
399348--399408	19	3.5	19	76	21	78	16	19	16	47	1.83
399393--399463	20	3.6	20	90	1	99	18	26	19	35	1.95
399381--399487	20	5.4	20	82	1	90	18	22	23	35	1.96
399438--399493	20	2.8	20	88	0	76	23	16	28	32	1.96
399832--399922	41	2.2	42	86	2	130	21	40	15	21	1.90
401332--401370	14	2.8	14	84	0	51	35	0	17	46	1.49
401475--401512	20	1.9	20	94	0	67	39	23	18	18	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
401507--401593	19	4.8	19	89	10	139	47	17	21	13	1.82
401497--401593	38	2.8	33	85	14	149	46	18	21	13	1.83
401612--401651	20	2.0	20	95	0	71	15	25	22	37	1.93
402192--402306	20	5.7	20	77	6	97	23	17	25	33	1.96
402239--402327	41	2.2	41	79	4	99	22	17	23	35	1.95
402316--402397	21	4.0	20	73	12	76	34	17	25	23	1.96
404869--404909	20	2.1	19	86	4	55	46	2	2	48	1.28
405413--405439	2	13.5	2	100	0	54	48	0	0	51	1.00
407602--407690	39	2.3	38	81	9	92	30	17	26	24	1.98
410552--410694	64	2.2	65	82	4	184	34	19	20	25	1.96
410721--410758	20	1.9	20	88	0	58	34	18	21	26	1.96
411475--411534	23	2.6	23	89	0	93	18	26	26	28	1.98
416640--416679	18	2.1	18	86	9	53	2	2	12	82	0.87
418145--418225	40	2.0	40	100	0	162	33	9	27	29	1.89
422730--422836	42	2.6	42	80	4	128	24	21	23	30	1.99
423024--423141	59	2.0	59	94	0	209	32	16	22	29	1.95
423198--423284	42	2.1	41	81	8	97	24	16	24	35	1.94
423654--423855	53	3.8	53	88	2	280	29	19	26	23	1.98
427343--427504	64	2.5	66	81	7	183	33	17	23	25	1.96
428256--428323	23	3.0	23	75	0	73	16	23	25	35	1.95
430760--430859	42	2.4	42	83	1	103	27	8	18	47	1.76
432301--432503	104	1.9	105	85	1	282	40	11	13	34	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
432311--432532	104	2.1	103	80	3	246	41	10	13	34	1.79
433776--433828	20	2.7	20	96	0	97	22	11	35	30	1.89
438391--438605	44	5.0	44	86	3	274	33	21	20	24	1.97
438391--438606	85	2.5	87	84	6	267	32	22	20	24	1.98
439361--439441	41	2.0	41	95	0	144	18	18	40	22	1.91
444900--444930	2	15.5	2	100	0	62	51	0	0	48	1.00
445332--445688	178	2.0	176	96	3	655	36	10	11	40	1.77
445625--445774	76	2.0	74	91	8	243	40	2	9	47	1.50
447750--447775	13	2.0	13	100	0	52	38	7	0	53	1.30
447853--447883	2	15.5	2	100	0	62	48	0	0	51	1.00
458671--458703	16	2.1	16	94	0	57	33	27	6	33	1.81
459139--459180	22	2.0	22	90	9	70	4	40	23	30	1.75
464357--464453	39	2.5	39	91	3	153	47	10	12	29	1.74
464407--464438	16	2.1	15	94	5	55	50	6	6	37	1.53
465111--465158	22	2.2	22	85	10	64	39	0	2	58	1.10
465120--465150	12	2.7	12	95	5	55	38	0	0	61	0.96
470685--470757	22	3.3	22	98	0	137	34	8	21	35	1.84
484242--484280	17	2.4	16	83	8	51	38	0	2	58	1.12
484668--484705	3	12.7	3	100	0	76	65	0	0	34	0.93
485703--485763	25	2.4	26	91	5	99	60	1	6	31	1.32
488032--488059	2	14.0	2	100	0	56	50	0	0	50	1.00
489674--489724	17	2.9	17	75	11	50	64	7	0	27	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
495698--495738	8	5.2	8	82	5	57	34	0	29	36	1.58
495819--496425	127	4.8	128	93	2	1069	21	23	21	32	1.98
495819--496425	255	2.4	255	97	0	1144	21	23	21	32	1.98
496787--496859	34	2.1	34	87	5	103	39	2	5	52	1.39
497377--497446	21	3.3	21	82	7	79	20	21	37	21	1.95
498014--498058	22	2.0	22	83	12	56	60	6	0	33	1.23
499192--499271	34	2.4	33	81	8	92	60	1	0	38	1.05
501497--501557	30	2.0	30	87	3	86	59	6	3	31	1.39
508310--508616	153	2.0	153	81	5	361	32	20	18	28	1.96
508109--508767	354	1.9	352	79	6	758	30	18	20	29	1.96
508463--509017	201	2.8	200	83	4	654	30	20	20	28	1.97
510041--510098	24	2.5	24	83	8	66	50	1	0	48	1.11
510131--510229	36	3.1	31	78	20	82	53	1	1	44	1.14
510127--510236	33	3.3	34	77	16	97	52	0	0	45	1.13
510152--510236	36	2.5	33	77	17	95	56	0	1	42	1.07
510465--510502	17	2.2	17	86	9	51	50	0	2	47	1.15
510492--510539	19	2.5	19	76	6	53	60	4	2	33	1.27
511602--511664	15	4.1	15	76	11	56	41	0	1	57	1.08
511777--511831	23	2.4	24	82	14	64	36	0	1	61	1.06
511793--511841	22	2.1	24	81	7	57	38	0	4	57	1.18
513388--513470	42	2.0	42	85	0	112	22	31	16	28	1.96
513451--513499	21	2.3	21	96	0	89	18	30	24	26	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
514008--514080	34	2.1	34	89	0	110	50	6	5	36	1.52
514187--514217	14	2.2	14	100	0	62	58	16	0	25	1.38
514302--514407	23	4.9	22	69	20	89	37	16	0	44	1.55
514548--515021	139	3.4	139	94	1	819	32	23	22	21	1.98
518004--518051	22	2.1	23	84	3	62	45	0	2	52	1.12
519412--519471	21	2.9	21	78	9	52	43	1	1	53	1.20
519811--519858	22	2.1	23	85	11	64	50	0	4	45	1.21
520013--520053	20	2.0	20	85	0	55	29	19	12	39	1.88
520027--520107	29	2.8	29	94	0	144	33	18	8	39	1.81
520035--520110	15	5.2	15	73	17	79	32	18	6	42	1.76
520036--520116	14	5.6	14	78	5	90	34	18	7	39	1.79
520994--521028	15	2.3	15	100	0	70	40	28	14	17	1.88
522126--522198	30	2.4	30	93	0	119	30	23	20	26	1.99
522184--522248	31	2.1	31	85	0	85	33	23	18	24	1.96
524158--524191	15	2.3	15	100	0	68	14	20	20	44	1.87

Tables:   1   2   3

The End!