genome.fa.s8418.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008418.1 Hibiscus syriacus cultivar Beakdansim tig00111198_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  855397

Tables:   1   2   3   4   

This is table  2  of  4  ( 416 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
197149--197320	57	3.0	58	84	3	224	34	29	20	15	1.94
197369--197417	24	2.0	24	84	0	62	48	16	8	26	1.73
201733--201900	56	3.0	57	87	1	239	35	28	20	15	1.93
201733--201903	57	3.0	57	87	3	238	34	28	20	16	1.94
201954--202014	24	2.6	25	71	10	65	57	14	6	21	1.60
214265--214307	6	7.0	6	97	2	77	0	0	34	65	0.93
219688--219726	20	2.0	20	84	0	51	23	7	23	46	1.78
219901--219961	20	2.9	21	87	7	79	18	26	34	21	1.96
226812--227048	27	8.6	27	65	22	93	25	22	26	25	2.00
226751--227051	55	5.5	55	82	5	322	26	21	25	25	2.00
233728--233793	29	2.3	29	100	0	132	7	18	16	57	1.62
236690--236719	15	2.0	15	93	0	51	23	6	0	70	1.11
239796--239895	33	3.0	33	94	0	173	45	16	7	32	1.74
239890--239931	21	2.0	21	95	0	75	47	7	14	30	1.71
242289--242313	13	1.9	13	100	0	50	48	16	16	20	1.82
246067--246160	24	3.9	24	94	0	152	38	11	12	37	1.80
246630--247003	41	9.1	41	78	4	299	39	18	10	31	1.84
246661--246897	122	1.9	122	83	5	309	39	21	10	29	1.86
246630--246930	163	1.8	163	81	0	368	38	20	10	30	1.86
259559--259613	20	2.8	20	74	17	51	32	1	1	63	1.15
260304--260453	79	1.9	79	93	2	257	24	14	22	38	1.91
267648--267864	115	1.9	115	90	0	344	29	15	21	34	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
268346--268440	48	2.0	48	91	0	154	29	10	12	47	1.75
268761--268788	13	2.2	13	100	0	56	21	0	10	67	1.20
268951--269016	13	4.9	12	71	21	51	33	7	22	36	1.83
274672--274729	27	2.1	28	81	9	66	25	15	5	53	1.63
277073--277122	15	3.1	16	82	8	66	74	0	20	6	1.03
280177--280662	124	3.8	123	75	13	462	31	24	18	25	1.97
280107--280610	261	1.9	258	88	3	762	32	24	17	25	1.96
280744--280882	40	3.4	40	71	9	127	35	28	15	20	1.93
280731--280932	83	2.4	83	86	3	282	34	26	18	20	1.96
281155--281225	3	23.7	3	100	0	142	33	0	0	66	0.92
283247--283276	15	2.0	15	93	0	51	33	23	13	30	1.93
284928--284980	16	3.5	15	78	16	65	81	5	13	0	0.86
284950--284991	19	2.2	20	86	4	59	80	4	11	2	0.95
284925--284994	12	5.5	12	70	12	50	80	5	12	1	0.96
284924--284994	26	2.8	25	77	10	72	78	7	12	1	1.00
286590--287122	211	2.5	212	93	0	899	34	26	17	21	1.95
286557--287122	106	5.3	105	90	3	821	34	26	17	21	1.96
287872--287967	37	2.6	37	86	0	129	41	14	11	32	1.82
288668--288722	22	2.5	22	80	11	60	29	3	0	67	1.08
288689--288756	22	3.2	21	75	15	68	25	2	0	72	0.99
288668--288756	43	2.1	43	83	8	110	28	4	0	67	1.10
288615--288757	22	6.6	21	67	26	59	29	4	1	65	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
289516--289599	41	2.0	41	97	0	159	29	11	26	32	1.92
290561--290660	43	2.3	43	87	0	155	45	18	10	27	1.81
298528--298577	14	3.6	14	86	0	73	28	30	20	22	1.98
302552--302588	17	2.2	17	100	0	74	43	0	24	32	1.55
302919--302971	22	2.5	21	84	3	70	26	0	1	71	0.96
304484--304534	16	3.4	16	75	24	58	68	0	0	31	0.90
304482--304536	12	3.6	15	77	22	53	67	0	0	32	0.91
305256--305340	14	6.0	14	76	1	80	28	24	18	28	1.98
305271--305353	28	3.0	28	87	0	121	28	21	18	31	1.97
305276--305362	14	6.2	14	73	7	70	29	21	16	32	1.95
309620--309688	23	3.0	23	86	0	93	27	26	26	20	1.99
309704--309921	103	2.1	103	91	0	355	36	24	12	27	1.91
314665--314733	23	3.0	23	86	0	93	27	26	26	20	1.99
314749--314966	103	2.1	103	95	0	391	36	22	13	26	1.92
320889--320974	31	2.8	31	89	3	120	12	30	31	25	1.93
321725--321771	24	1.9	25	87	12	71	55	4	12	27	1.56
321711--321775	29	2.2	29	88	0	94	52	4	9	33	1.54
321783--321826	24	2.0	23	82	13	56	61	2	2	34	1.21
322602--322644	21	2.0	21	82	8	52	30	0	2	67	1.03
326112--326359	132	1.9	131	86	5	354	36	13	14	35	1.85
332495--332584	44	2.0	44	100	0	180	36	11	13	38	1.80
347933--348018	7	11.9	7	76	11	50	80	1	10	8	0.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
347934--348012	8	9.6	8	80	16	56	81	0	10	8	0.89
347931--348012	17	5.0	17	81	15	86	79	0	10	9	0.94
347944--347985	7	5.7	7	94	5	66	76	0	11	11	1.03
349210--349724	53	9.7	53	93	2	865	30	18	25	25	1.98
349210--349724	107	4.8	107	95	1	887	30	18	25	25	1.98
353991--354027	14	2.6	14	91	0	65	27	40	21	10	1.86
356017--356054	18	2.1	19	85	5	51	52	0	2	44	1.14
356808--356850	22	2.0	22	81	9	52	9	25	0	65	1.22
357651--357687	3	12.7	3	83	16	51	32	0	0	67	0.91
359745--359802	28	2.1	27	84	6	73	32	5	1	60	1.29
363088--363119	15	2.1	15	94	0	55	25	18	9	46	1.79
363649--363711	26	2.4	27	94	2	110	30	17	19	33	1.95
370755--370835	11	7.5	11	78	12	64	76	0	9	13	1.02
370750--370821	23	3.1	25	84	9	91	76	0	11	12	1.02
370748--370825	13	6.0	14	80	15	80	74	0	11	14	1.08
371199--371233	18	1.9	18	100	0	70	31	5	5	57	1.46
372408--374242	124	15.0	124	93	2	3115	41	15	17	25	1.89
372408--374242	728	2.5	739	95	2	3279	41	15	17	25	1.89
374144--374207	20	3.2	20	67	20	62	42	9	21	26	1.83
374192--374482	59	4.9	58	67	15	198	36	16	19	27	1.93
374432--374656	122	1.8	122	87	3	337	39	15	18	27	1.90
374078--374613	181	3.0	181	97	0	1009	38	16	19	26	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
374922--374958	3	12.7	3	83	16	51	32	0	0	67	0.91
375868--375915	22	2.1	23	85	11	64	25	2	8	64	1.32
375867--375918	23	2.2	24	80	16	65	25	1	7	65	1.30
376666--376694	14	2.0	15	93	6	51	75	0	3	20	0.94
378445--378510	24	2.8	24	78	15	66	56	0	13	30	1.38
383604--383648	23	1.9	24	81	4	56	71	2	4	22	1.15
384966--385111	72	2.0	74	85	7	201	44	8	17	29	1.79
385158--385218	29	2.1	29	84	6	79	36	6	3	54	1.43
385283--385474	82	2.4	76	81	12	194	40	15	8	35	1.78
396278--396795	270	1.9	271	96	0	966	33	11	22	32	1.90
398518--398557	20	2.0	20	86	13	57	35	7	12	45	1.70
409343--409761	45	9.3	45	85	2	502	41	9	20	29	1.83
415826--415881	22	2.7	20	81	10	76	30	12	28	28	1.93
416295--416730	45	9.7	45	89	1	579	40	9	21	28	1.85
424655--424700	20	2.3	19	85	14	58	26	15	8	50	1.73
445165--445257	29	3.2	28	86	3	114	33	9	10	46	1.71
445777--445844	28	2.4	28	83	9	77	36	7	26	29	1.83
446103--446133	16	1.9	16	100	0	62	38	19	6	35	1.77
447016--447075	30	2.0	29	87	3	84	40	8	18	33	1.80
449353--449404	21	2.5	21	80	0	59	28	26	21	23	1.99
449492--449554	30	2.1	30	90	0	99	41	11	17	30	1.84
449778--449841	18	3.6	18	78	0	74	37	3	23	35	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
452337--452398	9	6.9	9	83	10	65	75	0	22	1	0.88
452340--452398	3	19.7	3	81	6	57	74	0	23	1	0.91
452343--452447	6	16.3	6	74	18	61	77	0	17	4	1.00
453677--453751	30	2.5	30	84	4	98	41	10	18	29	1.84
455992--456054	30	2.1	30	88	5	92	38	9	19	33	1.84
457013--457060	23	2.1	23	84	7	62	29	2	12	56	1.48
463908--463950	20	2.2	20	87	4	61	16	23	0	60	1.35
467141--467166	9	2.9	9	100	0	52	19	0	0	80	0.71
468906--468966	29	2.1	29	100	0	122	31	16	14	37	1.89
470713--470744	3	10.7	3	93	0	55	28	0	0	71	0.86

Tables:   1   2   3   4