genome.fa.s8418.2.7.7.80.10.50.1000.4.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008418.1 Hibiscus syriacus cultivar Beakdansim tig00111198_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  855397

Tables:   1   2   3   4   

This is table  4  of  4  ( 416 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
699570--699599	14	2.1	14	93	0	51	13	26	6	53	1.64
710406--710457	23	2.3	23	89	0	86	17	17	26	38	1.92
711171--711289	46	2.6	46	87	0	175	26	23	11	38	1.89
711465--711541	32	2.5	31	82	4	91	14	23	29	32	1.94
718495--718535	19	2.1	20	90	4	66	46	17	7	29	1.74
719065--719129	27	2.4	27	97	0	121	30	24	10	33	1.90
727060--727087	12	2.3	12	100	0	56	14	0	0	85	0.59
727551--727634	26	3.2	26	80	6	105	36	9	16	36	1.82
727613--727742	62	2.1	62	94	0	224	36	11	10	41	1.76
727891--728023	20	6.8	20	87	6	184	39	9	24	25	1.86
727916--728036	36	3.2	36	86	6	145	39	9	24	25	1.86
736314--736363	23	2.2	23	82	7	57	32	4	8	56	1.47
739320--739362	20	2.2	20	86	0	59	34	9	20	34	1.85
742376--742418	20	2.2	20	86	0	59	30	13	20	34	1.92
753003--754613	810	2.0	810	97	0	3010	21	20	24	32	1.98
760359--760458	42	2.4	41	81	5	112	29	21	17	33	1.95
761498--761532	17	2.1	16	89	5	52	51	14	0	34	1.42
762963--763004	15	2.9	14	80	13	50	38	4	2	54	1.34
768888--768932	21	2.1	21	83	0	54	31	31	24	13	1.93
770455--770672	103	2.1	103	97	0	409	27	13	22	36	1.91
770688--770740	23	2.3	23	90	0	88	20	26	26	26	1.99
774017--774059	22	1.9	22	85	4	59	32	34	23	9	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
775533--775750	103	2.1	103	96	0	400	27	13	22	36	1.92
775766--775826	23	2.7	23	86	0	86	21	26	26	26	1.99
775757--775834	23	3.3	23	80	1	75	24	20	21	33	1.97
777800--777912	60	1.9	60	85	3	156	32	12	15	38	1.85
779784--779827	22	2.0	22	86	4	63	63	0	4	31	1.14
781389--781430	20	2.0	21	82	13	52	23	0	14	61	1.32
781570--781639	35	2.0	35	100	0	140	37	8	11	42	1.72
787480--787520	16	2.4	18	76	12	50	73	4	9	12	1.24
798857--799039	91	2.0	93	84	4	246	41	15	11	31	1.82
802985--803028	23	1.9	23	81	9	54	29	2	13	54	1.51
805599--805636	19	2.1	19	90	5	60	60	0	10	28	1.30
808122--815888	972	8.0	973	98	0	15000	48	11	11	28	1.75
820319--820385	3	22.3	3	93	0	116	35	1	0	62	1.04
821805--821844	12	3.1	13	82	10	55	40	0	0	60	0.97
822475--822541	28	2.4	27	75	7	71	23	5	1	68	1.20
822535--822567	12	2.5	14	90	9	52	24	6	3	66	1.28
833118--833166	8	6.5	8	83	6	59	87	0	12	0	0.54
833115--833167	15	3.6	14	87	5	70	84	0	15	0	0.61
834276--834628	83	4.3	83	95	2	629	26	13	24	35	1.93
835442--836049	113	5.4	114	90	5	904	36	13	20	29	1.91
835442--836049	221	2.7	228	90	5	938	36	13	20	29	1.91
836383--836445	3	21.7	3	83	6	85	33	3	1	61	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
836374--836456	17	5.1	15	72	17	60	38	2	1	57	1.19
836374--836479	31	3.2	32	80	11	92	43	2	0	52	1.22
836441--836479	11	3.8	10	86	10	53	56	2	0	41	1.13
837885--837921	12	3.0	12	84	7	56	37	0	0	62	0.96
840742--840857	35	3.3	35	93	2	207	29	21	28	20	1.98
850825--850863	18	2.2	18	100	0	78	28	10	15	46	1.78
851988--852066	31	2.5	31	85	0	104	40	15	11	32	1.83
853057--853178	29	4.1	31	85	9	173	31	25	20	22	1.98
853504--853568	31	2.2	26	84	13	67	49	18	3	29	1.63
853500--853560	31	2.0	31	100	0	122	47	19	3	29	1.65
854539--854567	10	2.9	10	100	0	58	68	0	31	0	0.89
855086--855154	29	2.3	31	85	5	88	36	14	10	39	1.80

Tables:   1   2   3   4

The End!