genome.fa.s8429.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008429.1 Hibiscus syriacus cultivar Beakdansim tig00111215_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  508731

Tables:   1   2   3   

This is table  1  of  3  ( 280 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2374--2449	36	2.1	36	97	0	143	31	10	14	43	1.79
4738--4815	36	2.2	36	85	0	102	16	10	43	29	1.81
11360--11629	134	2.0	134	98	0	522	35	9	9	45	1.70
32496--32544	18	2.7	18	96	0	89	46	8	22	22	1.77
33224--33275	20	2.5	21	81	3	61	38	21	23	17	1.93
33261--33377	61	1.9	61	82	0	144	34	25	17	23	1.96
33264--33377	20	5.7	20	80	6	95	32	26	17	23	1.97
33936--33977	19	2.2	19	86	0	57	52	23	16	7	1.68
33973--34137	19	9.1	19	74	15	134	13	23	19	43	1.87
33973--34137	33	4.6	36	76	13	135	13	23	19	43	1.87
34081--34137	20	2.8	20	79	10	62	14	22	19	43	1.86
37616--37651	14	2.6	14	95	0	63	30	0	25	44	1.54
37778--37836	19	3.4	19	73	22	74	13	22	18	45	1.84
37759--37835	33	2.3	34	84	6	104	18	22	20	38	1.93
41167--41229	33	1.9	33	86	0	90	46	19	20	14	1.84
41443--41500	20	2.9	20	97	0	107	37	24	22	15	1.93
41523--41596	19	4.5	16	83	16	66	13	20	18	47	1.82
41519--41586	19	3.8	19	87	12	101	13	22	17	47	1.82
41703--41739	14	2.6	14	86	0	56	48	21	0	29	1.50
43600--43699	19	5.2	19	87	3	119	44	19	22	15	1.87
43733--43814	18	4.6	19	76	14	95	14	20	19	45	1.85
43799--43842	20	2.2	20	84	4	54	20	22	20	36	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45699--45741	20	2.2	20	86	0	59	48	20	18	11	1.79
45709--45781	20	3.7	20	94	0	119	35	26	19	19	1.95
46235--46307	20	3.7	20	88	0	110	26	19	27	27	1.99
46215--46349	20	6.7	19	75	12	74	25	17	23	33	1.96
46215--46352	41	3.4	41	77	7	147	24	17	23	34	1.96
46338--46430	41	2.3	41	98	0	141	18	23	18	39	1.92
46338--46430	20	4.6	20	78	6	98	18	23	18	39	1.92
46929--46994	28	2.4	28	84	0	78	56	0	3	40	1.15
46951--47009	28	2.3	27	82	11	70	55	0	5	38	1.22
47295--47383	38	2.3	39	77	9	101	44	2	15	37	1.59
49019--49065	22	2.1	22	96	0	85	51	31	6	10	1.62
50520--50589	34	2.1	32	86	5	95	21	31	14	32	1.93
50872--50914	21	2.0	21	95	0	77	27	27	20	23	1.99
50950--50994	22	2.0	22	100	0	90	13	26	46	13	1.80
51051--51078	14	2.0	14	100	0	56	14	28	28	28	1.95
51195--51254	29	2.0	31	93	6	106	43	16	6	33	1.74
51414--51457	22	2.0	23	95	4	81	36	2	11	50	1.51
52534--52581	19	2.5	20	82	3	62	29	12	6	52	1.63
53793--53835	21	2.0	21	95	0	77	27	27	20	23	1.99
53870--53911	21	2.0	21	100	0	84	19	28	38	14	1.90
53969--53997	15	1.9	15	100	0	58	13	24	34	27	1.93
53946--54025	21	4.1	21	73	18	64	15	23	36	25	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54115--54174	29	2.0	31	93	6	106	43	16	6	33	1.74
56273--56322	19	2.7	19	84	6	68	52	0	2	46	1.12
56444--56482	20	2.0	20	94	0	69	58	0	5	35	1.20
56977--57119	32	4.5	32	78	0	133	44	27	8	20	1.80
62884--62913	15	2.0	15	100	0	60	40	26	6	26	1.81
64086--64123	17	2.2	17	90	9	60	15	44	23	15	1.85
71310--71369	5	11.8	5	77	10	50	18	50	21	10	1.76
71320--71376	27	2.2	26	87	9	80	17	47	22	12	1.81
76837--76996	64	2.5	63	85	6	198	35	17	20	26	1.95
78506--78566	18	3.2	18	78	17	77	22	22	31	22	1.99
83987--84028	15	2.8	15	85	0	57	19	19	28	33	1.96
84499--84856	106	3.4	106	91	0	545	29	12	25	31	1.93
91404--91591	88	2.1	88	98	0	358	45	11	15	27	1.81
98856--98918	30	2.1	30	96	0	117	39	3	6	50	1.44
99826--100005	60	3.0	59	81	1	189	31	21	6	41	1.78
101120--101192	21	3.3	21	67	22	60	65	0	6	27	1.17
101089--101191	46	2.3	46	98	1	199	62	0	8	29	1.25
101112--101187	25	3.2	25	67	14	79	65	0	6	27	1.17
113769--113824	22	2.5	22	79	5	58	26	8	8	55	1.60
116060--116182	65	1.9	66	86	5	178	33	24	21	21	1.97
116060--116203	65	2.2	66	82	4	175	32	23	21	22	1.98
116808--116868	23	2.7	23	84	0	86	18	24	27	29	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
120357--120386	6	5.0	6	100	0	60	16	16	33	33	1.92
132281--132328	22	2.2	23	88	7	73	50	2	4	43	1.33
132290--132334	21	2.0	21	87	8	63	51	4	4	40	1.42
132331--132708	34	10.8	35	83	10	431	46	3	5	43	1.46
132331--132685	71	5.1	70	83	11	394	47	4	5	43	1.45
132337--132708	105	3.5	103	81	13	411	46	3	5	44	1.45
132748--132804	16	3.6	16	79	13	55	24	1	1	71	1.04
132757--132813	19	2.9	19	75	12	53	24	1	1	71	1.04
132766--132827	27	2.4	27	78	10	67	19	3	3	74	1.10
134407--134446	20	2.0	20	85	0	53	45	2	2	50	1.28
135841--135891	20	2.5	20	96	0	93	39	25	13	21	1.90
135947--136140	20	9.6	20	76	8	76	35	25	19	19	1.95
135943--136140	40	5.0	39	81	4	200	35	26	19	19	1.95
135947--136139	60	3.2	60	83	0	251	35	25	19	19	1.95
136510--136580	33	2.2	33	92	0	115	11	22	18	47	1.80
136700--136754	14	3.6	14	73	21	56	41	23	25	9	1.83
136679--136770	33	2.8	33	88	0	112	42	23	23	9	1.84
136766--136862	19	5.7	18	73	20	84	10	24	22	42	1.85
136788--136876	14	5.7	14	76	21	88	8	25	23	41	1.83
136771--136884	33	3.5	33	92	2	203	9	24	21	44	1.82
138557--139203	92	7.1	93	95	3	1167	22	12	19	46	1.83
139246--139341	19	5.3	19	78	13	103	45	28	16	9	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
139337--139454	19	6.8	19	73	20	114	10	20	22	46	1.80
139342--139433	33	2.8	33	95	1	168	10	20	21	46	1.81
139405--139462	19	3.0	19	87	7	82	10	17	25	46	1.79
139465--139779	158	2.0	157	96	3	587	35	14	14	34	1.87
141435--141470	14	2.6	14	95	0	63	33	0	22	44	1.53
141575--141676	19	5.6	19	84	13	151	44	17	23	14	1.86
141667--141978	19	17.9	18	75	17	254	15	21	17	45	1.85
141683--141939	51	4.9	51	87	8	265	14	21	17	45	1.84
141683--141978	102	2.9	103	86	12	339	14	21	17	45	1.84
144183--144207	12	2.1	12	100	0	50	0	28	0	72	0.86
144382--144428	24	2.0	24	87	8	69	38	21	14	25	1.92
145109--145457	20	17.5	20	86	4	427	19	18	26	34	1.95
148807--148851	21	2.1	21	84	8	56	17	4	15	62	1.49
153213--153294	40	2.0	40	97	0	155	21	23	25	29	1.99
155931--155975	24	1.9	23	86	4	63	31	0	2	66	1.04
167658--167723	24	2.9	23	80	10	64	31	19	9	39	1.83
167805--168130	158	2.0	163	91	7	538	34	14	18	32	1.91
168754--168789	4	9.0	4	100	0	72	25	0	25	50	1.50
169321--169377	25	2.3	25	96	0	105	50	14	7	28	1.68
169321--169389	25	2.8	25	93	0	102	47	15	7	28	1.72
171681--172466	54	14.5	54	79	7	598	25	23	28	23	2.00
171681--172466	107	7.2	108	75	9	589	25	23	28	23	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
177824--177862	15	2.6	15	100	0	78	17	25	15	41	1.89
180597--180714	58	2.0	58	96	0	218	46	16	20	16	1.84
185243--185292	3	16.7	3	100	0	100	0	32	0	68	0.90
185627--185669	3	14.3	3	100	0	86	67	0	32	0	0.91
185277--186018	394	1.9	394	98	0	1448	34	14	19	30	1.92
188996--189022	12	2.2	12	100	0	54	62	14	0	22	1.31
191231--191575	173	2.0	173	95	0	627	31	18	20	28	1.97
191811--191840	14	2.1	14	93	0	51	43	26	3	26	1.70
194354--194395	22	1.9	22	90	0	66	21	9	9	59	1.57
203022--203183	37	4.3	39	75	10	129	28	9	10	51	1.67

Tables:   1   2   3