genome.fa.s8429.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008429.1 Hibiscus syriacus cultivar Beakdansim tig00111215_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  508731

Tables:   1   2   3   

This is table  2  of  3  ( 280 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
203022--203183	76	2.1	76	82	6	186	28	9	10	51	1.67
206182--206225	21	2.1	21	82	0	52	31	4	11	52	1.57
209374--209438	32	2.1	32	85	5	89	52	1	0	46	1.10
210082--210212	60	2.2	60	79	8	133	34	13	16	35	1.88
223285--223372	27	3.3	27	98	0	167	42	15	13	28	1.86
226650--226744	27	3.6	27	90	5	142	43	16	10	29	1.82
229135--229195	15	3.7	15	73	23	59	55	19	16	8	1.65
232739--232825	35	2.5	36	81	12	101	41	0	1	57	1.06
232747--232821	32	2.3	33	84	8	93	41	0	1	57	1.07
232810--232853	19	2.4	18	81	14	54	34	0	4	61	1.16
232966--233019	17	3.2	17	72	0	54	31	0	3	64	1.11
234738--234812	36	2.1	37	97	2	143	52	17	18	12	1.75
240298--240337	21	1.9	21	89	0	62	25	40	25	10	1.86
244140--244187	21	2.3	21	85	0	60	25	39	12	22	1.89
244191--244284	21	4.5	21	92	5	145	18	34	27	20	1.95
244803--244904	35	3.0	34	82	2	132	54	3	2	38	1.34
244804--244911	34	3.2	33	81	7	126	55	4	2	37	1.35
250481--250547	32	2.1	32	82	0	80	41	2	11	43	1.57
251036--251159	38	3.4	38	73	8	148	21	18	15	44	1.86
251181--251247	32	2.1	32	82	0	80	41	2	11	43	1.57
250465--251815	697	1.9	699	98	0	2607	33	12	15	38	1.84
253746--253950	104	2.0	102	88	1	302	19	16	26	37	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
261306--261444	21	6.5	22	82	8	112	20	19	24	35	1.95
261454--261876	63	6.8	63	82	10	471	36	22	19	21	1.95
261441--261882	21	21.2	20	75	12	274	35	22	19	21	1.96
261900--261943	21	2.1	21	91	0	70	20	15	31	31	1.94
262884--262938	3	18.3	3	100	0	110	67	0	0	32	0.91
264815--264875	32	1.9	32	89	0	95	21	14	11	52	1.73
271018--271116	49	2.0	50	98	2	191	21	20	16	42	1.89
273702--273753	20	2.5	21	81	3	61	40	19	23	17	1.91
273742--273855	20	5.7	20	79	6	95	31	25	18	24	1.97
273739--273855	61	1.9	61	82	0	144	33	24	17	23	1.97
274377--274443	19	3.5	19	83	2	89	50	23	16	8	1.73
274439--274509	19	3.7	19	90	3	115	11	19	22	46	1.81
274444--274520	39	2.0	39	87	5	111	9	19	25	45	1.80
274533--274565	14	2.4	14	94	0	57	9	24	24	42	1.83
274482--274555	33	2.2	33	85	0	103	10	21	27	40	1.86
276680--276746	21	3.2	21	66	6	55	23	35	20	19	1.95
276653--276746	42	2.2	42	81	7	102	22	35	21	21	1.96
278104--278139	14	2.6	14	95	0	63	30	0	25	44	1.54
278321--278447	33	3.9	32	81	8	157	15	21	18	44	1.86
278317--278447	19	7.7	19	62	26	60	15	21	18	45	1.86
278314--278446	66	2.0	66	91	0	212	17	21	18	43	1.88
280743--280767	12	2.1	12	100	0	50	0	28	0	72	0.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
280942--280995	24	2.2	24	86	0	72	38	18	16	25	1.92
282052--282109	20	2.9	20	92	0	89	41	22	20	15	1.90
282133--282186	14	3.5	14	77	22	63	11	20	20	48	1.80
282115--282185	33	2.2	33	84	0	88	19	19	21	39	1.93
282128--282205	33	2.4	33	91	0	120	12	23	21	42	1.87
282292--282328	14	2.6	14	86	0	56	48	21	0	29	1.50
284176--284280	20	5.7	18	75	14	74	42	24	18	14	1.87
284287--284382	19	5.7	16	71	22	65	11	18	22	46	1.81
284309--284366	14	3.9	14	79	16	71	8	17	25	48	1.75
284292--284382	32	2.8	33	93	3	157	10	17	23	48	1.79
284368--284410	20	2.2	20	87	4	61	18	23	20	37	1.94
284376--284421	20	2.3	20	88	0	65	15	21	26	36	1.93
284903--284947	18	2.5	18	88	0	72	13	15	44	26	1.83
286267--286325	20	3.0	20	84	0	64	42	20	18	18	1.90
286588--286631	22	2.0	22	100	0	88	18	13	45	22	1.84
286819--286932	20	5.7	20	81	8	115	23	18	26	31	1.97
286799--286933	20	6.7	19	80	9	99	23	17	25	33	1.96
286922--287014	20	4.5	21	75	4	91	18	24	17	39	1.91
286925--287014	41	2.2	41	97	0	135	18	24	16	40	1.91
291518--291564	20	2.2	20	85	11	58	21	23	17	38	1.93
299092--299310	105	2.1	106	98	0	422	36	17	15	30	1.91
300545--300576	15	2.1	15	94	0	55	34	6	0	59	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
301329--301353	13	1.9	13	100	0	50	40	12	24	24	1.88
301528--301576	3	16.3	3	100	0	98	0	0	32	67	0.91
310947--311004	2	30.0	2	93	6	102	50	0	0	50	1.00
316372--317596	403	3.0	408	91	5	1934	31	20	12	35	1.90
318433--318460	2	14.0	2	100	0	56	50	0	0	50	1.00
319036--319593	278	2.0	278	95	4	1011	36	11	16	35	1.85
322677--322702	5	5.2	5	100	0	52	80	0	0	19	0.71
323631--323714	44	1.9	44	95	0	150	32	9	9	48	1.68
324488--324607	39	3.1	39	95	0	213	29	20	25	25	1.99
328355--328719	199	1.8	199	84	3	493	39	21	15	23	1.92
328560--328887	165	2.0	166	87	3	482	38	22	14	25	1.91
331853--331911	22	2.7	22	97	0	109	25	25	23	25	2.00
333918--333986	15	4.3	16	80	10	79	21	31	27	18	1.97
333918--333986	32	2.2	32	94	0	120	21	31	27	18	1.97
334076--334117	6	7.2	6	86	2	59	28	19	16	35	1.93
334484--334514	16	1.9	16	100	0	62	45	16	0	38	1.47
335378--335414	19	1.9	19	94	0	65	62	2	0	35	1.10
335509--335567	31	1.9	31	92	0	100	49	10	11	28	1.72
338990--339054	34	1.9	34	96	0	121	26	7	20	46	1.77
341262--341332	31	2.3	31	85	4	90	36	4	9	49	1.56
343954--344016	26	2.6	25	83	14	71	39	3	1	55	1.25
343967--344039	26	2.8	27	81	10	80	41	4	0	54	1.19
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
344008--344070	32	2.0	32	87	3	92	41	1	1	55	1.19
348972--349333	131	2.8	130	84	3	442	30	10	18	40	1.84
351387--351431	2	22.5	2	95	0	81	48	0	2	48	1.13
351299--351508	110	1.9	110	92	3	350	49	0	4	45	1.27
351848--351881	2	17.0	2	100	0	68	50	0	0	50	1.00
362999--363087	45	1.9	47	93	4	155	28	11	23	37	1.89
372731--372777	18	2.5	19	86	6	69	74	0	19	6	1.03
372753--372785	15	2.1	16	94	5	59	72	0	18	9	1.10
372741--372845	26	4.2	25	72	17	83	74	1	19	4	1.09
372734--372787	15	3.1	17	79	17	58	74	0	18	7	1.05
372794--372852	19	3.2	19	81	11	61	76	0	20	3	0.93
373988--374397	51	8.0	51	93	1	660	29	15	26	28	1.96
374002--374504	51	9.6	56	90	2	273	29	15	25	29	1.96
374351--374532	55	3.3	55	80	5	154	29	14	21	34	1.94
375619--375661	16	2.7	16	100	0	86	18	4	18	58	1.56
380671--380828	39	4.0	39	79	1	181	32	21	27	18	1.97
380674--380824	79	1.9	78	87	1	221	33	20	27	18	1.96
386151--386205	28	1.9	29	85	10	78	56	12	3	27	1.53
386150--386212	28	2.2	30	77	11	69	52	14	6	26	1.65
386470--386626	39	4.0	38	76	6	154	29	23	27	19	1.98
387924--387952	11	2.5	12	94	5	51	55	6	0	37	1.27
392840--392892	26	2.0	26	82	13	65	43	3	0	52	1.19
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
395278--395305	2	14.0	2	100	0	56	50	0	0	50	1.00
399933--400014	41	2.0	41	92	4	139	40	12	17	30	1.86
401763--403225	492	3.0	486	91	3	2421	29	17	16	36	1.92
411202--411247	23	2.0	24	86	4	67	26	26	26	21	2.00
411215--411528	149	2.1	148	90	6	494	33	21	18	26	1.96
412420--412454	18	1.9	18	88	11	54	22	17	5	54	1.64
413036--413080	21	2.1	21	83	0	54	15	22	28	33	1.95
415453--415507	26	2.2	26	84	15	71	41	10	1	45	1.50
415885--415964	38	2.2	38	84	4	101	45	1	8	45	1.42
415912--416385	37	12.8	37	78	12	381	44	4	5	44	1.49

Tables:   1   2   3