Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008429.1 Hibiscus syriacus cultivar Beakdansim tig00111215_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  508731

Tables:   1   2   3   

This is table  3  of  3  ( 280 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
415958--416379
114
3.8
111
79
9
366
45
4
5
44
1.47
416086--416145
12
4.9
12
69
18
52
43
6
8
41
1.61
415912--416385
75
6.4
74
77
10
425
44
4
5
44
1.49
416265--416379
34
3.5
33
82
6
119
51
3
3
41
1.36
416402--416439
5
7.6
5
82
11
51
18
2
2
76
1.02
416391--416445
25
2.5
22
83
16
69
18
1
1
78
0.94
416413--416445
9
3.7
9
92
8
50
18
0
0
81
0.68
427290--427367
41
1.9
41
91
0
129
41
11
14
33
1.81
435370--438353
495
6.0
496
94
0
5201
29
16
16
36
1.92
441830--441859
15
2.0
15
93
0
51
26
16
13
43
1.85
442650--442692
2
21.5
2
100
0
86
51
0
0
48
1.00
446180--446354
60
2.9
61
77
11
173
32
18
6
42
1.76
448851--448891
21
2.0
21
90
0
64
41
19
0
39
1.52
448920--448965
20
2.2
21
88
3
67
63
8
8
19
1.49
449699--449825
60
2.1
61
86
2
177
33
18
15
33
1.92
450130--452600
419
5.9
416
96
0
4358
40
9
15
35
1.80
455268--455336
36
1.9
36
90
0
111
18
31
14
34
1.91
455269--455345
36
2.1
36
85
4
102
18
36
11
33
1.87
455563--455605
8
5.4
8
91
0
68
25
11
23
39
1.88
456186--456262
29
2.6
29
81
8
84
38
9
12
38
1.76
456338--456406
30
2.3
30
87
5
95
42
11
7
39
1.69
458424--458484
29
2.1
29
100
0
122
24
19
16
39
1.92
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
463535--463569
18
1.9
18
100
0
70
45
20
5
28
1.73
465370--465482
60
1.9
60
83
3
147
33
14
14
38
1.86
468718--468801
40
2.1
40
97
0
159
28
27
22
21
1.99
473166--473210
21
2.1
21
84
8
56
62
15
4
17
1.49
478711--478774
31
2.2
28
77
17
78
18
21
29
29
1.97
479532--479586
27
2.0
27
82
6
67
72
3
3
20
1.15
479548--479606
18
3.5
17
77
8
59
71
1
1
25
1.05
479672--479842
11
14.1
11
66
17
72
46
5
1
46
1.35
479649--480076
36
11.6
36
88
7
553
44
5
3
46
1.46
479660--480076
74
5.6
74
86
9
550
44
5
4
46
1.45
480057--480097
21
2.0
21
100
0
82
43
4
2
48
1.37
480020--480130
58
1.9
59
94
5
199
44
5
3
46
1.43
482480--482531
19
2.6
19
80
11
52
44
21
17
17
1.87
488613--488654
22
2.0
22
90
4
68
66
2
0
30
1.04
489528--489586
21
2.8
22
76
5
68
28
0
28
42
1.56
493647--493685
2
19.5
2
100
0
78
48
0
0
51
1.00
495551--495611
23
2.7
23
84
0
86
29
27
24
18
1.98
496224--496367
65
2.2
66
82
4
175
22
21
23
32
1.98

Tables:   1   2   3

The End!