genome.fa.s8433.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008433.1 Hibiscus syriacus cultivar Beakdansim tig00111231_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  451884

Tables:   1   2   3   

This is table  3  of  3  ( 283 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
384384--384891	41	12.2	41	77	5	432	28	17	18	35	1.94
384384--384891	166	3.1	166	88	1	732	28	17	18	35	1.94
384404--384875	125	3.8	123	81	3	462	28	17	17	36	1.93
384384--384891	207	2.4	207	81	4	576	28	17	18	35	1.94
388436--388745	43	7.3	42	76	9	247	24	20	20	34	1.96
388422--388745	85	3.8	85	81	5	350	23	20	20	35	1.96
388422--388741	128	2.5	128	76	6	324	23	20	20	35	1.96
388422--388768	86	4.0	85	77	8	328	23	20	20	35	1.96
389097--389152	20	2.8	20	77	20	71	42	17	21	17	1.89
389137--389214	33	2.4	33	88	0	111	44	17	23	14	1.85
389226--389282	14	3.7	14	72	20	51	10	22	22	43	1.84
389221--389290	33	2.1	33	97	0	131	10	22	20	47	1.79
389274--389345	20	3.5	20	83	5	83	12	15	19	52	1.74
390394--390465	22	3.3	22	84	5	92	27	22	26	23	1.99
390406--390464	21	2.8	21	89	2	82	25	25	28	20	1.99
390907--391062	64	2.4	63	80	10	156	28	18	19	32	1.96
394708--394875	84	2.0	84	98	0	327	28	22	13	35	1.92
397346--397417	22	3.3	22	84	5	92	29	20	25	25	1.99
397356--397416	21	2.9	21	87	2	77	26	24	27	21	1.99
397859--398015	64	2.4	63	80	10	158	28	17	20	33	1.96
398995--399196	20	9.9	20	80	8	187	19	17	25	38	1.93
398994--399201	61	3.4	60	87	2	256	18	18	25	37	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
398996--399188	101	1.9	101	91	0	314	18	17	24	38	1.92
398994--399230	61	3.9	61	82	6	191	19	17	24	37	1.94
399216--399268	20	2.7	20	88	11	74	15	18	24	41	1.89
400091--400998	228	4.0	227	82	1	848	21	23	26	29	1.99
407350--407385	18	2.0	18	100	0	72	44	0	11	44	1.39
407435--407467	2	17.5	2	87	12	52	45	0	0	54	0.99
407435--407467	17	1.9	17	100	0	66	45	0	0	54	0.99
407442--407472	15	2.1	15	93	0	53	41	0	3	54	1.16
423329--423400	30	2.4	30	85	0	90	30	26	22	20	1.98
423387--423572	31	6.0	31	75	16	179	31	19	18	30	1.96
423411--423575	63	2.7	62	93	3	280	30	19	18	31	1.95
428319--428390	30	2.4	30	85	0	90	31	25	20	22	1.98
428402--428567	63	2.7	63	96	0	298	31	18	18	31	1.95
428382--428564	31	5.8	32	78	12	200	31	19	18	30	1.96
437182--437224	14	3.2	13	87	9	59	20	0	4	74	1.00
438729--438788	28	2.1	28	81	12	68	36	3	1	58	1.25
439079--439150	31	2.4	31	81	6	85	38	6	12	41	1.70
445074--445704	309	2.0	311	93	2	1070	36	12	15	35	1.84
449430--449464	14	2.6	14	90	4	54	31	0	0	68	0.90
450635--450814	44	4.1	45	84	11	198	20	31	12	36	1.89
450635--450814	88	2.1	86	84	7	229	20	31	12	36	1.89

Tables:   1   2   3

The End!