genome.fa.s8442.2.7.7.80.10.50.1000.5.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008442.1 Hibiscus syriacus cultivar Beakdansim tig00111244_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  816021

Tables:   1   2   3   4   5   

This is table  5  of  5  ( 531 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
714559--714604	2	24.0	2	86	8	69	52	0	0	47	1.00
715270--715391	43	2.8	43	92	0	199	22	18	30	27	1.98
719387--719436	21	2.4	21	100	0	100	18	38	20	24	1.93
726925--726958	2	17.5	2	93	6	61	50	0	0	50	1.00
728812--729266	232	2.0	232	98	1	878	36	13	18	31	1.90
731272--731386	57	2.0	56	98	1	221	34	30	8	26	1.86
734156--734242	29	3.0	29	84	0	120	17	37	27	17	1.92
734251--734303	10	5.3	10	78	17	65	22	50	16	9	1.74
734221--734303	40	2.1	40	84	8	107	21	49	16	12	1.78
734247--734471	30	7.6	30	75	15	182	22	46	19	11	1.82
734291--734398	29	3.7	29	79	1	108	21	42	22	13	1.88
734375--734471	20	4.8	20	85	9	144	23	50	16	9	1.74
734163--734438	128	2.2	128	89	5	425	20	44	22	13	1.86
734399--734431	10	3.3	10	95	0	57	21	51	21	6	1.69
735099--735145	20	2.3	20	82	10	60	31	0	17	51	1.46
735417--735508	14	6.3	14	77	18	98	42	4	7	45	1.52
735417--735508	27	3.1	28	84	13	98	42	4	7	45	1.52
735417--735508	41	2.1	46	88	11	140	42	4	7	45	1.52
735472--735526	19	3.2	19	78	19	66	45	3	7	43	1.49
737577--737618	8	5.4	8	82	2	50	57	14	0	28	1.38
737572--737618	16	3.0	16	84	3	51	57	12	0	29	1.36
737657--737736	32	2.5	33	84	13	98	48	12	0	38	1.41
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
737772--737903	44	3.0	46	76	17	120	49	11	0	39	1.39
737843--737931	41	2.2	40	78	8	90	46	10	1	42	1.45
737971--738009	16	2.3	18	86	8	55	56	5	0	38	1.22
738019--738063	19	2.4	19	82	10	56	2	33	0	64	1.06
738034--738064	15	2.0	16	93	6	55	0	35	0	64	0.94
738315--738409	29	3.3	29	93	0	154	23	31	30	14	1.94
738396--738477	32	2.6	32	98	0	155	10	36	25	26	1.89
738562--738621	29	2.1	29	93	0	102	20	28	26	25	1.99
741961--742018	29	2.0	29	89	0	89	13	36	27	22	1.92
742099--742178	10	7.4	10	69	15	52	25	25	40	10	1.86
742075--742178	33	3.2	33	91	0	163	25	26	37	10	1.88
742248--742272	12	2.1	12	100	0	50	16	36	8	40	1.77
742290--742345	29	1.9	29	100	0	112	19	30	35	14	1.91
747121--747160	2	20.0	2	100	0	80	50	0	0	50	1.00
747946--748013	35	1.9	35	87	0	100	45	16	2	35	1.62
750475--750520	20	2.3	19	85	14	58	26	15	8	50	1.73
752066--752105	21	1.9	21	89	0	62	32	22	20	25	1.98
758846--758895	15	3.3	15	94	0	91	28	32	24	16	1.96
765708--765757	15	3.3	15	88	0	73	30	30	22	18	1.97
786881--786916	2	18.0	2	100	0	72	50	0	0	50	1.00
788990--789163	44	4.0	44	90	3	253	27	21	9	42	1.83
805450--805493	21	2.2	20	87	4	61	15	20	0	63	1.31
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
805450--805506	20	2.8	20	84	5	62	15	19	0	64	1.28
809534--809579	24	1.9	24	82	8	58	4	36	0	58	1.18
811461--811512	24	2.2	24	82	0	59	50	17	11	21	1.77
811477--811592	24	4.8	25	85	6	118	40	18	16	24	1.91
811484--811592	48	2.3	48	84	6	132	39	19	16	24	1.91
812734--812768	18	1.9	18	88	0	52	28	17	0	54	1.43
814079--814103	13	1.9	13	100	0	50	16	28	40	16	1.89

Tables:   1   2   3   4   5

The End!