genome.fa.s8442.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008442.1 Hibiscus syriacus cultivar Beakdansim tig00111244_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  816021

Tables:   1   2   3   4   5   

This is table  1  of  5  ( 531 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6630--6775	57	2.6	57	81	6	170	39	9	11	39	1.74
7117--7177	28	2.2	28	85	5	79	44	1	0	54	1.10
7154--7184	16	1.9	16	93	0	53	41	3	0	54	1.16
10911--10951	18	2.3	18	95	0	73	2	7	51	39	1.43
10919--10975	6	9.2	6	82	3	69	3	3	49	43	1.36
10976--11036	3	20.3	3	83	12	72	60	0	0	39	0.97
10976--11036	30	2.0	30	90	0	95	60	0	0	39	0.97
11856--11897	22	2.0	21	86	13	59	16	26	14	42	1.86
12991--13027	14	2.6	15	87	8	51	2	21	0	75	0.92
26963--26995	9	3.5	10	88	12	52	72	0	0	27	0.85
26968--26995	12	2.3	12	100	0	56	75	0	0	25	0.81
29947--29991	23	2.0	23	81	0	54	17	8	13	60	1.58
31265--31302	19	2.0	20	94	5	69	47	23	15	13	1.81
31419--31716	163	1.8	163	91	2	492	47	13	12	26	1.78
31580--32238	183	3.6	182	88	2	953	44	13	15	27	1.83
32627--32672	19	2.4	19	92	0	74	43	0	19	36	1.51
32791--32815	5	5.0	5	100	0	50	20	0	20	60	1.37
33909--33964	24	2.5	22	77	13	60	41	1	7	50	1.40
34632--34670	18	2.2	18	95	0	69	53	0	41	5	1.23
36137--36186	19	2.5	20	90	3	75	32	0	10	58	1.31
36529--37791	199	6.3	199	95	0	2265	41	16	15	26	1.88
38178--38211	15	2.3	15	89	0	50	23	52	2	20	1.60
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39098--39123	9	2.9	9	100	0	52	34	30	23	11	1.90
40789--42535	200	8.8	200	90	3	2815	44	13	14	27	1.83
41122--41483	179	2.0	179	92	1	600	43	13	14	29	1.83
45491--45739	86	2.9	87	93	1	437	32	15	11	40	1.83
45661--45705	23	2.0	23	90	0	72	40	20	6	33	1.78
47475--47523	20	2.3	22	82	10	66	22	2	12	63	1.39
48303--48362	15	3.8	16	82	8	70	26	30	26	16	1.97
48306--48374	32	2.2	32	81	5	77	24	30	28	15	1.96
48412--48441	15	1.9	16	93	6	53	20	26	23	30	1.98
48602--48655	21	2.5	21	81	3	63	42	1	0	55	1.10
49089--49124	18	2.1	18	90	10	58	25	5	0	69	1.10
49243--49343	32	3.2	32	67	25	97	31	7	8	51	1.62
49248--49350	36	3.1	36	59	30	84	31	8	8	51	1.63
49229--49351	62	2.0	62	100	0	246	32	10	8	48	1.67
49542--49589	17	2.8	17	77	0	60	47	10	12	29	1.74
49770--49822	21	2.5	21	93	0	88	28	28	22	20	1.99
50018--50072	13	4.2	13	75	13	58	49	12	3	34	1.59
50058--50156	33	3.0	33	92	1	155	46	15	6	32	1.70
50151--50190	21	1.9	21	94	0	71	47	7	15	30	1.72
52489--52528	12	3.1	12	80	19	53	20	17	15	47	1.83
52488--52527	15	2.9	14	85	14	57	20	17	15	47	1.83
60521--60572	25	2.1	25	96	0	95	46	7	17	28	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
66199--66237	2	18.5	2	89	10	60	46	0	48	5	1.24
68832--69020	95	2.0	95	94	0	333	38	20	17	24	1.93
75222--75259	7	5.6	7	82	17	53	55	2	0	42	1.14
75223--75260	20	1.9	19	94	5	67	52	2	0	44	1.14
76922--78077	68	17.0	68	92	0	1871	31	16	24	27	1.96
76922--78649	204	8.6	204	90	2	2675	31	16	24	27	1.96
77951--78194	117	2.1	117	94	0	425	30	17	24	27	1.97
78019--78126	49	2.2	49	93	0	180	31	14	25	28	1.95
77888--78262	185	2.0	185	93	0	633	31	16	24	27	1.96
78068--78649	68	8.6	68	92	0	939	31	16	25	27	1.96
78603--78824	81	2.7	81	86	1	284	32	13	25	28	1.93
81301--81622	42	7.9	42	77	8	263	33	19	19	26	1.96
81415--81560	75	1.9	77	81	2	179	36	20	17	25	1.94
81492--81625	40	3.3	42	82	4	132	33	17	21	26	1.96
81663--81719	29	2.0	29	92	0	96	22	19	29	28	1.98
84594--84668	21	3.6	21	77	16	68	17	6	4	72	1.23
84597--84647	26	2.0	26	88	7	77	19	5	1	72	1.15
84611--84696	43	1.9	43	81	11	102	19	5	3	70	1.22
87246--87501	95	2.7	95	83	5	318	34	18	16	30	1.94
88885--88986	29	3.5	29	94	0	177	30	15	10	43	1.81
88972--89303	37	9.3	36	74	9	279	25	19	13	40	1.89
88943--89336	175	2.2	176	88	3	582	26	19	13	40	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
89148--89303	73	2.1	72	86	1	213	25	19	13	41	1.88
89552--89644	36	2.6	35	83	8	118	43	17	9	30	1.81
89108--89638	271	2.0	268	83	8	684	31	19	12	37	1.88
89840--89865	11	2.4	11	100	0	52	38	46	0	15	1.46
90637--90911	21	13.2	21	77	10	246	30	23	21	24	1.99
90637--90911	42	6.6	42	83	5	278	30	23	21	24	1.99
90804--90876	20	3.6	20	78	10	94	34	19	23	23	1.97
90926--91029	21	5.0	21	79	8	122	25	23	22	29	1.99
90927--91029	42	2.5	42	96	0	188	25	23	22	29	1.99
91758--91901	21	7.1	21	71	21	103	36	20	20	22	1.95
91757--91868	58	2.0	56	94	3	197	34	20	20	24	1.96
91823--91913	42	2.2	42	93	0	155	37	23	18	20	1.94
91844--91919	21	3.6	21	79	13	84	35	25	19	19	1.95
93192--93266	21	3.6	21	81	13	68	18	5	4	72	1.20
93195--93245	26	2.0	26	88	7	77	19	5	1	72	1.15
93196--93282	26	3.7	24	75	20	60	19	3	3	73	1.12
93207--93282	21	3.5	21	79	13	75	19	2	3	73	1.11
93241--93294	23	2.3	23	77	0	63	24	5	3	66	1.29
93209--93294	43	1.9	43	81	11	102	20	4	3	70	1.20
95047--95197	57	2.6	62	82	15	182	41	0	1	56	1.10
96033--96066	17	2.0	17	88	0	50	70	0	2	26	1.01
108417--108454	19	2.0	20	89	5	60	21	13	21	44	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
108685--108741	21	2.7	21	75	0	60	31	22	8	36	1.85
110826--110972	60	2.5	60	81	2	179	29	17	19	33	1.95
111512--111565	23	2.6	19	74	23	54	7	7	3	81	0.97
111520--111564	23	2.0	23	91	8	74	6	8	4	80	1.03
111525--111594	28	2.5	29	77	9	74	10	12	2	74	1.18
112144--112178	18	1.9	18	88	11	54	28	8	14	48	1.73
112665--112706	17	2.4	17	88	8	57	54	0	2	42	1.13
115155--115237	38	2.2	36	81	6	87	43	2	8	45	1.47
115154--115332	93	1.9	94	88	5	274	43	2	11	43	1.54
115249--115553	38	8.2	37	85	7	399	43	2	9	44	1.50
116840--116886	22	2.1	22	84	7	60	17	8	0	74	1.05
117030--117055	5	5.2	5	100	0	52	19	0	0	80	0.71
122982--123051	34	2.1	34	89	5	108	20	32	15	31	1.94
125331--125387	28	2.0	28	86	6	80	29	21	15	33	1.94
125713--125787	31	2.4	31	95	0	132	34	17	8	40	1.79
126564--126644	35	2.3	35	82	6	101	44	19	1	34	1.59
126581--126660	36	2.3	35	80	2	88	41	27	2	28	1.69
127560--127595	17	2.1	17	100	0	72	22	0	30	47	1.52
130659--130698	19	2.1	19	90	0	62	27	25	27	20	1.99
131720--131792	31	2.3	31	86	6	94	30	24	9	35	1.87
131735--131800	31	2.1	30	94	5	114	24	27	12	36	1.91
133763--133828	31	2.1	31	97	0	123	37	10	25	25	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
134781--134821	2	20.5	2	100	0	82	48	0	0	51	1.00
138799--138954	29	5.4	29	80	9	104	28	3	14	53	1.56
138862--138970	29	3.8	29	93	0	173	23	2	18	55	1.56
138930--138997	29	2.3	29	89	0	100	33	4	14	47	1.65
138865--138997	58	2.3	58	82	0	158	27	3	15	52	1.60
139031--139120	29	3.1	29	95	1	155	40	7	3	48	1.48
140386--140447	3	20.7	3	100	0	124	66	0	0	33	0.92
140621--140852	82	2.8	81	88	2	322	25	15	21	37	1.92
140934--141185	88	2.8	88	85	5	314	28	18	18	33	1.95
141114--141262	76	2.0	76	85	2	201	30	19	18	30	1.96

Tables:   1   2   3   4   5