genome.fa.s8459.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008459.1 Hibiscus syriacus cultivar Beakdansim tig00111272_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  632685

Tables:   1   2   3   4   

This is table  1  of  4  ( 389 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
339--403	19	3.4	19	81	12	71	7	12	0	80	0.91
351--419	15	3.8	18	77	22	72	8	13	0	78	0.97
11690--11729	2	20.0	2	85	10	55	52	2	0	45	1.14
12747--12785	18	2.1	19	90	9	62	69	0	5	25	1.09
12735--12788	18	3.0	18	75	24	60	68	0	7	24	1.15
14747--14963	20	10.2	20	72	14	132	41	23	19	15	1.90
14747--14932	62	2.9	62	80	9	182	40	24	20	14	1.90
14850--14946	49	1.9	50	93	4	169	37	26	20	15	1.93
14828--14960	69	1.9	68	89	8	207	39	24	21	15	1.91
15071--15121	6	8.5	6	100	0	102	33	50	15	0	1.44
15611--15744	6	22.5	6	99	0	261	0	16	50	32	1.45
15848--16129	20	13.7	20	85	11	301	17	19	27	36	1.93
15848--16191	40	8.4	39	85	7	336	16	19	26	38	1.92
15840--16191	102	3.5	101	88	5	473	16	19	25	38	1.92
15993--16129	42	3.3	40	90	8	136	17	18	27	36	1.94
15848--16192	82	4.2	78	81	9	325	16	19	26	37	1.92
16141--16191	19	2.6	20	78	12	52	11	19	25	43	1.85
17423--17473	18	2.9	18	72	19	54	31	0	1	66	1.03
19380--19578	102	2.0	102	80	6	224	26	18	22	32	1.97
21149--21295	67	2.2	65	78	12	149	47	4	9	38	1.55
22002--22100	19	5.1	19	67	13	58	58	4	4	33	1.35
33281--33316	14	2.6	13	87	12	54	0	2	8	88	0.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33279--33315	8	4.9	8	80	12	51	0	2	8	89	0.58
34263--34304	19	2.2	19	95	0	75	40	19	7	33	1.78
38414--38451	20	1.9	19	85	15	51	39	5	13	42	1.66
38398--38505	53	2.0	53	96	0	198	32	5	12	49	1.64
38467--38506	20	2.0	20	95	0	71	42	5	12	40	1.64
41599--41631	2	16.5	2	100	0	66	51	0	48	0	1.00
42125--42163	19	2.1	19	85	0	51	46	2	2	48	1.29
48476--48509	5	6.8	5	100	0	68	58	0	20	20	1.39
49281--49315	15	2.3	15	90	0	52	8	65	17	8	1.44
50401--50459	20	3.0	20	87	0	91	49	6	18	25	1.72
51443--51484	15	2.6	17	77	14	52	35	7	2	54	1.41
51452--51484	15	2.2	15	94	0	57	36	9	3	51	1.49
51826--51950	51	2.5	51	81	5	139	36	12	9	42	1.75
52236--52272	2	18.5	2	100	0	74	48	0	0	51	1.00
54006--54118	56	2.0	56	89	0	172	28	13	30	28	1.94
54110--54134	2	12.5	2	100	0	50	48	0	0	52	1.00
55956--55992	16	2.2	17	90	4	58	70	2	0	27	1.01
64596--64661	35	2.0	33	83	13	84	30	1	7	60	1.33
64938--64997	31	2.0	31	90	3	95	50	8	15	26	1.72
68291--68543	20	12.5	20	75	7	197	36	23	18	20	1.95
68291--68540	41	6.2	41	84	3	312	36	23	18	20	1.95
68836--68869	16	2.1	16	88	0	50	23	0	5	70	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69098--69176	20	3.9	21	86	5	94	51	17	16	13	1.76
69196--69253	19	3.0	19	87	2	80	17	22	20	39	1.92
69210--69266	20	2.9	18	82	17	69	15	24	21	38	1.92
70968--71347	94	4.1	94	96	1	665	21	12	18	47	1.82
71450--71507	14	3.8	14	75	20	62	44	18	25	10	1.82
71435--71559	33	3.8	33	87	2	146	46	24	20	9	1.80
71498--71565	19	3.8	19	74	18	74	50	29	13	7	1.68
71609--71655	20	2.3	20	88	0	67	21	19	23	36	1.95
72139--72237	21	4.7	21	74	6	76	23	33	20	23	1.97
72136--72243	42	2.6	41	75	11	112	21	35	19	24	1.96
73594--73629	14	2.6	14	90	0	54	30	0	22	47	1.52
73731--73826	33	2.8	33	90	3	138	41	20	23	13	1.88
73764--73831	19	3.8	19	72	21	74	45	19	22	13	1.84
73841--73919	33	2.4	34	93	2	133	13	22	17	45	1.84
75504--75614	20	5.5	20	81	6	143	18	18	23	40	1.91
75504--75713	40	5.2	40	82	5	244	19	18	23	39	1.92
75522--75713	20	9.5	20	71	19	114	19	18	24	38	1.93
75504--75713	61	3.5	60	76	11	171	19	18	23	39	1.92
75497--75713	81	2.7	80	77	9	217	19	18	23	38	1.93
75681--75774	42	2.3	42	76	9	95	22	21	21	35	1.96
84916--84962	3	15.7	3	100	0	94	68	0	0	31	0.90
87264--87300	18	2.0	19	89	5	58	40	10	48	0	1.38
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
87305--87354	25	2.0	26	88	4	75	36	4	48	12	1.59
92304--92351	18	2.7	18	77	3	62	47	8	43	0	1.33
93991--94075	30	2.8	29	78	8	80	41	1	7	50	1.37
95391--95433	7	6.0	7	86	8	52	67	2	25	4	1.22
96500--96556	30	1.9	30	85	7	80	33	15	1	49	1.55
100726--100818	48	1.9	48	84	4	125	39	9	18	32	1.83
102099--102151	21	2.5	22	84	6	74	18	24	18	37	1.94
102141--102193	20	2.7	20	87	0	79	41	22	16	18	1.90
102193--102246	20	2.7	20	100	0	108	29	25	18	25	1.98
103089--103142	24	2.2	24	86	0	72	24	14	20	40	1.90
105574--105660	20	4.3	21	84	8	110	37	26	19	16	1.92
105574--105660	40	2.2	40	87	8	124	37	26	19	16	1.92
105711--105795	33	2.5	33	88	1	125	14	21	18	45	1.84
105912--105948	14	2.6	14	86	0	56	48	21	0	29	1.50
107317--107412	41	2.3	41	79	10	97	21	14	37	26	1.92
107927--108092	20	8.4	20	75	18	143	16	18	23	42	1.89
107976--108069	30	3.1	30	82	3	125	13	17	23	45	1.84
109971--110010	20	2.0	20	95	0	71	57	20	12	10	1.63
109977--110040	20	3.2	20	88	0	83	43	25	15	15	1.86
110374--110439	22	3.0	22	90	0	105	21	12	39	27	1.88
110643--110766	20	6.3	20	91	3	207	20	19	18	41	1.91
110618--110766	40	3.8	39	88	5	205	21	19	18	40	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
110763--110803	21	2.0	21	95	0	73	41	17	24	17	1.89
112816--112857	21	2.0	21	85	0	57	28	28	16	26	1.97
112878--112963	21	4.1	21	86	0	100	24	24	23	27	2.00
113669--113837	31	5.5	31	92	0	266	40	20	18	20	1.91
117434--117509	35	2.2	34	86	4	100	42	18	1	38	1.59
122027--122066	10	4.0	10	86	0	53	27	32	0	40	1.57
122113--122146	9	3.9	9	84	7	52	35	0	2	61	1.11
122112--122150	17	2.4	17	95	4	71	33	0	5	61	1.18
123900--123931	15	2.1	15	94	0	55	34	15	40	9	1.80
124076--124118	13	3.4	13	80	6	52	16	2	11	69	1.28
124160--124230	34	2.1	34	87	10	101	19	2	14	63	1.42
129212--129243	2	16.0	2	93	0	55	0	53	0	46	1.00
133062--133150	29	3.0	29	83	6	99	60	2	5	31	1.32
133194--133242	15	3.4	14	78	16	55	61	0	0	38	0.96
134200--134230	2	15.5	2	100	0	62	51	0	0	48	1.00
134658--134697	21	1.9	21	100	0	80	35	10	7	47	1.65
138574--138728	64	2.4	63	76	14	149	25	19	21	34	1.96
145273--145315	21	2.0	21	81	0	50	25	37	16	20	1.93
145321--145368	21	2.2	22	82	14	64	25	18	20	35	1.95
145836--145889	26	2.1	26	82	0	63	22	3	12	61	1.47
150161--150195	2	17.5	2	93	0	61	48	2	0	48	1.16
152157--152214	26	2.2	26	100	0	116	27	25	17	29	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
156194--156308	57	2.0	58	98	1	223	26	13	24	34	1.93
156596--156687	46	2.0	45	97	2	175	26	21	28	23	1.99
161640--161726	42	2.0	44	95	4	160	24	6	22	45	1.76
168769--168966	98	2.0	99	97	2	373	35	19	16	28	1.93
169160--169204	19	2.3	21	85	11	60	42	0	2	55	1.12
170160--170203	23	2.0	21	86	8	61	75	0	0	25	0.81
172972--173053	38	2.2	38	95	0	146	31	19	17	31	1.95
180956--180980	13	1.9	13	100	0	50	96	0	4	0	0.24
182451--182500	15	3.3	15	82	2	64	52	22	0	26	1.48
182843--182980	36	3.9	35	80	7	161	30	19	13	36	1.91

Tables:   1   2   3   4