Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008459.1 Hibiscus syriacus cultivar Beakdansim tig00111272_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  632685

Tables:   1   2   3   4   

This is table  4  of  4  ( 389 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
595492--595539
25
1.9
25
83
8
62
10
0
6
83
0.81
599310--599355
17
2.6
18
76
13
51
67
4
2
26
1.21
601351--601785
223
2.0
217
89
6
671
45
8
7
39
1.62
601850--601894
20
2.3
19
85
14
65
55
11
15
17
1.68
602014--602060
20
2.4
19
82
10
67
53
10
17
19
1.72
602023--602065
20
2.3
19
88
11
63
51
11
16
20
1.75
604266--604330
21
3.1
21
80
6
69
40
15
29
15
1.88
604363--604428
33
2.0
33
90
0
105
28
0
48
22
1.51
606192--606240
19
2.6
19
90
6
73
30
4
10
55
1.52
606370--607827
196
7.5
196
97
2
2694
35
15
16
31
1.90
618836--618921
6
14.3
6
78
0
64
37
6
34
20
1.80
618851--618925
3
25.0
3
76
0
69
36
5
34
24
1.78
618839--618925
30
2.9
30
85
0
120
35
6
34
22
1.81
618839--618925
12
7.2
12
82
0
75
35
6
34
22
1.81
618836--618921
18
4.8
18
79
0
73
37
6
34
20
1.80
620388--620831
183
2.4
183
94
0
798
36
13
16
33
1.88
621500--621536
18
2.1
18
89
0
56
32
5
10
51
1.60
621492--621538
24
2.0
24
86
0
67
34
4
14
46
1.64
621793--621879
39
2.2
39
91
0
147
48
19
13
18
1.81
622299--622370
23
3.2
23
88
4
101
34
4
22
38
1.73
622731--622793
21
2.8
23
83
9
85
33
4
22
39
1.75
622089--623130
423
2.5
425
94
4
1840
40
7
12
38
1.72
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
625496--625560
28
2.4
28
82
5
71
36
10
3
49
1.53
625634--625660
13
2.1
13
100
0
54
14
7
29
48
1.71
631883--632065
31
5.4
32
72
18
99
45
4
2
46
1.36
631883--632269
38
10.6
37
74
17
230
44
5
2
46
1.42
632012--632224
77
2.8
77
80
14
251
44
6
2
46
1.44
632336--632368
2
17.0
2
93
6
59
48
0
0
51
1.00
632392--632426
9
3.8
9
85
7
52
51
0
2
45
1.16

Tables:   1   2   3   4

The End!