genome.fa.s8475.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008475.1 Hibiscus syriacus cultivar Beakdansim tig00111303_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  982705

Tables:   1   2   3   4   

This is table  2  of  4  ( 427 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
298733--298822	32	2.8	32	86	0	126	21	30	17	31	1.96
303982--304028	18	2.6	18	96	0	85	21	51	19	8	1.73
304010--304056	8	6.5	8	77	22	59	14	38	25	21	1.92
304005--304049	13	3.3	13	90	6	63	15	42	24	17	1.88
304026--304057	7	4.4	7	92	7	55	12	34	28	25	1.92
304010--304056	15	3.3	15	91	5	71	14	38	25	21	1.92
305478--305526	26	1.9	26	87	4	73	36	20	18	24	1.94
306486--306617	48	2.8	48	76	13	137	21	16	18	42	1.89
306503--306617	24	4.8	24	88	6	162	22	17	19	40	1.91
306554--306627	24	3.1	24	86	3	78	21	16	18	43	1.88
308792--308838	18	2.6	18	96	0	85	21	51	19	8	1.73
308820--308866	8	6.5	8	77	22	59	14	38	25	21	1.92
308815--308859	13	3.3	13	90	6	63	15	42	24	17	1.88
308836--308867	7	4.4	7	92	7	55	12	34	28	25	1.92
308820--308866	15	3.3	15	91	5	71	14	38	25	21	1.92
310290--310339	26	1.9	26	87	0	73	36	22	18	24	1.95
311297--311428	48	2.8	48	76	13	137	21	16	18	42	1.89
311314--311428	24	4.8	24	88	6	162	22	17	19	40	1.91
311365--311438	24	3.1	24	86	3	78	21	16	18	43	1.88
313603--313649	18	2.6	18	96	0	85	21	51	19	8	1.73
313631--313677	8	6.5	8	77	22	59	14	38	25	21	1.92
313626--313670	13	3.3	13	90	6	63	15	42	24	17	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
313647--313678	7	4.4	7	92	7	55	12	34	28	25	1.92
313631--313677	15	3.3	15	91	5	71	14	38	25	21	1.92
315099--315148	26	1.9	26	87	0	73	36	22	18	24	1.95
316108--316239	48	2.8	48	76	13	137	21	16	18	42	1.89
316125--316239	24	4.8	24	88	6	162	22	17	19	40	1.91
316176--316249	24	3.1	24	86	3	78	21	16	18	43	1.88
320201--320271	31	2.3	31	95	0	124	29	33	18	18	1.95
339205--339285	19	3.9	21	74	19	71	24	30	25	18	1.98
342212--342335	51	2.4	51	82	2	151	20	33	26	20	1.97
345926--346012	35	2.5	34	78	12	88	55	10	6	27	1.59
348148--348360	111	1.9	110	97	0	399	44	11	7	36	1.69
348640--348765	50	2.5	50	77	2	137	19	26	35	18	1.95
348813--348848	16	2.2	16	95	0	63	41	16	13	27	1.87
348883--348928	20	2.3	20	92	3	76	23	41	0	34	1.55
354571--354742	95	1.8	95	100	0	344	25	28	19	26	1.99
357224--357276	18	2.9	18	91	0	88	16	20	32	30	1.95
360196--360238	22	2.0	22	86	9	61	27	13	27	30	1.95
360572--360692	54	2.2	54	92	0	197	28	20	17	33	1.95
360952--361206	68	3.8	68	87	2	359	28	14	25	30	1.95
361156--361474	81	3.9	81	85	1	381	36	10	23	29	1.89
361543--361660	46	2.6	46	88	0	173	45	8	20	25	1.79
364895--364937	16	2.8	16	76	16	54	41	30	6	20	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
369704--369736	16	2.1	15	94	5	57	54	6	9	30	1.56
373890--373944	22	2.5	22	91	2	85	54	7	14	23	1.65
373890--373954	22	3.0	22	86	2	69	55	7	13	23	1.64
377449--377499	22	2.3	23	96	3	95	45	17	17	19	1.86
379359--379395	17	2.2	17	86	13	51	54	5	5	35	1.47
382735--382765	15	2.1	15	100	0	62	25	0	25	48	1.52
382844--382884	22	1.9	21	85	5	55	17	12	9	60	1.57
385955--385995	15	2.7	15	100	0	82	34	24	0	41	1.55
385954--386319	60	6.1	60	77	5	310	26	35	3	34	1.75
385985--386319	30	11.2	30	83	2	230	25	35	4	34	1.76
385983--386308	120	2.7	120	86	1	449	25	35	4	34	1.76
386251--386302	15	3.4	16	70	20	56	25	36	3	34	1.74
386972--387004	14	2.2	16	89	10	52	54	18	3	24	1.57
390888--390931	2	22.0	2	100	0	88	50	0	0	50	1.00
391969--392006	17	2.2	17	100	0	76	10	18	10	60	1.57
397538--397942	110	3.6	110	74	11	331	29	2	16	52	1.55
406682--406809	61	2.1	61	98	0	247	34	14	21	29	1.93
407151--407263	44	2.5	44	84	1	127	30	15	20	33	1.93
407374--407432	23	2.6	23	83	0	73	22	16	27	33	1.95
417001--417050	21	2.4	21	93	0	91	20	24	26	30	1.98
417338--417382	21	2.1	21	84	8	56	28	17	22	31	1.97
425116--425153	19	2.0	20	85	15	53	21	0	26	52	1.47
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
425362--425424	20	3.4	20	66	20	64	33	12	23	30	1.92
425362--425439	35	2.2	35	93	0	138	33	14	23	29	1.93
426120--426173	23	2.3	24	84	9	76	16	22	20	40	1.91
427971--427995	12	2.1	12	100	0	50	44	0	48	8	1.32
430108--430183	38	2.0	38	84	5	100	39	21	11	27	1.88
430190--430247	25	2.3	25	90	0	89	34	5	3	56	1.38
432245--432312	29	2.3	30	87	5	93	42	16	1	39	1.57
439279--439335	29	2.0	29	92	0	96	36	22	1	38	1.65
441451--441604	65	2.4	65	86	5	215	31	20	18	29	1.96
449496--449619	64	1.9	64	85	8	171	31	20	18	29	1.96
453027--453075	24	2.0	24	88	0	71	36	24	22	16	1.94
484490--484540	21	2.5	21	84	9	70	68	0	9	21	1.18
484504--484552	19	2.5	21	80	12	59	69	0	12	18	1.19
484982--485019	18	2.2	18	85	4	51	36	2	2	57	1.26
488526--488563	13	3.0	13	88	3	60	44	0	0	55	0.99
488577--488631	23	2.5	22	88	11	87	43	12	3	40	1.60
489874--490028	28	5.4	28	82	3	166	30	5	22	40	1.77
490937--491227	117	2.5	116	88	3	408	18	16	33	31	1.93
490964--491265	117	2.6	116	82	5	268	22	13	33	30	1.93
491522--491560	18	2.2	17	86	13	53	28	0	7	64	1.21
496577--496612	2	18.5	2	94	5	65	50	0	0	50	1.00
497397--497494	29	3.3	29	85	1	124	30	5	23	40	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
498788--499079	117	2.5	116	90	1	440	18	16	33	31	1.93
502406--502675	105	2.6	105	89	0	423	23	20	18	38	1.93
503589--503657	8	8.9	8	77	17	56	5	13	0	81	0.87
508667--508712	2	23.0	2	100	0	92	50	0	0	50	1.00
521454--521487	16	2.1	17	88	5	52	64	0	0	35	0.94
522063--522095	3	11.0	3	100	0	66	66	0	0	33	0.92
525950--525990	14	3.1	14	79	6	50	51	0	4	43	1.23
530175--530200	2	13.0	2	100	0	52	50	0	0	50	1.00
537923--537962	20	2.0	20	100	0	80	35	5	25	35	1.78
543701--543733	16	2.1	16	88	11	50	18	21	6	54	1.64
549268--549409	31	4.6	31	95	0	257	18	18	22	40	1.91
550122--550163	21	2.0	21	90	0	66	26	21	26	26	1.99
550555--550581	13	2.1	13	100	0	54	7	29	22	40	1.81
553924--553977	22	2.4	22	87	6	72	44	18	18	18	1.87
554723--554844	31	3.9	31	72	10	106	33	17	18	31	1.94
558027--558119	27	3.4	27	95	0	168	29	19	15	36	1.92
560222--560302	3	26.7	3	87	2	99	59	0	0	40	0.98
560528--561311	113	7.0	113	92	2	1251	30	18	14	35	1.92
560528--561311	342	2.3	338	91	2	1249	30	18	14	35	1.92
560528--561311	229	3.5	225	91	2	1256	30	18	14	35	1.92
562027--562406	83	4.6	83	96	0	681	37	21	14	26	1.92
563181--563223	16	2.5	18	88	7	63	48	6	9	34	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
563181--563242	16	3.8	15	77	14	52	46	6	12	33	1.68
570863--570894	15	2.1	15	94	0	55	46	9	18	25	1.79
574890--574922	12	2.7	13	90	9	52	69	0	0	30	0.88
576316--576377	12	5.2	12	77	12	56	54	0	0	45	0.99
578285--578335	26	2.0	26	84	7	68	74	0	9	15	1.06
579681--579715	13	2.8	13	95	4	63	31	17	37	14	1.89
579731--579923	32	6.2	32	81	13	201	33	21	33	10	1.88
579729--579924	93	2.1	91	96	2	356	33	21	33	11	1.90
579729--579923	61	3.2	64	84	10	248	33	21	33	11	1.89
579973--580034	29	2.1	29	100	0	124	12	30	33	22	1.92

Tables:   1   2   3   4