genome.fa.s8475.2.7.7.80.10.50.1000.4.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008475.1 Hibiscus syriacus cultivar Beakdansim tig00111303_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  982705

Tables:   1   2   3   4   

This is table  4  of  4  ( 427 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
837180--837275	35	2.7	34	80	6	111	40	23	1	34	1.62
845211--845243	8	4.1	8	100	0	66	12	0	12	75	1.04
865656--865710	22	2.5	22	75	0	56	29	9	23	38	1.85
873982--874063	20	3.9	21	79	7	76	17	23	34	25	1.96
877871--877910	21	1.9	21	85	10	55	35	10	2	52	1.48
881162--881216	22	2.5	22	75	0	56	30	9	20	40	1.83
881836--881875	18	2.2	18	100	0	80	22	55	12	10	1.67
887070--887124	22	2.5	22	76	5	58	30	10	21	36	1.88
891384--891437	22	2.5	22	84	6	65	53	1	7	37	1.40
892704--892869	85	2.0	84	86	3	235	27	14	11	46	1.79
892917--892971	21	2.7	21	85	2	76	34	0	1	63	1.05
892988--893052	33	2.0	33	87	0	94	50	23	0	26	1.49
893021--893064	22	2.0	22	90	0	70	52	22	0	25	1.48
893315--893380	18	3.8	18	73	17	59	39	0	16	43	1.48
893391--893422	16	2.0	16	93	0	55	62	3	0	34	1.11
896461--896595	29	4.7	29	89	1	182	44	17	3	34	1.66
897960--898006	23	2.0	23	100	0	94	55	8	27	8	1.59
905958--906013	22	2.5	22	100	0	112	41	26	17	14	1.88
906800--906866	29	2.3	29	90	7	102	28	25	4	41	1.74
912793--912823	13	2.3	14	94	5	55	29	29	25	16	1.96
920024--920081	7	8.6	7	88	3	84	27	29	27	15	1.96
921257--921310	18	3.0	18	91	0	72	22	25	31	20	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
922820--922888	23	3.0	23	82	0	84	28	26	24	20	1.99
923830--923871	2	21.0	2	100	0	84	50	0	0	50	1.00
926593--926648	29	2.0	29	82	3	69	33	10	7	48	1.65
927220--927258	2	19.5	2	100	0	78	48	0	0	51	1.00
932305--932452	76	2.0	75	90	4	235	29	2	10	58	1.45
932417--932552	65	2.1	65	86	9	190	28	0	14	56	1.39
933107--933150	23	1.9	23	95	0	79	20	4	0	75	0.98
933826--933880	25	2.2	25	100	0	110	32	27	18	21	1.96
938818--938875	8	7.1	8	78	18	57	17	1	1	79	0.90
938824--938875	14	3.8	14	82	5	70	17	1	0	80	0.80
938882--938928	5	9.6	5	76	4	51	23	4	0	72	1.02
939088--939118	15	2.0	16	93	6	55	58	12	22	6	1.58
941164--941302	72	1.9	72	85	5	192	28	2	10	58	1.46
953156--953524	20	18.5	20	85	4	458	34	26	18	20	1.96
954194--954239	24	1.9	24	86	8	67	26	15	21	36	1.93
954413--954437	12	2.1	12	100	0	50	72	0	28	0	0.86
956723--957048	19	18.4	19	80	16	398	47	17	20	14	1.82
956723--957070	33	9.9	38	82	14	398	46	17	20	14	1.83
956751--957070	160	2.0	158	92	4	538	46	16	21	14	1.83
956751--957070	52	6.0	52	92	6	527	46	16	21	14	1.83
957077--957178	19	5.6	19	85	12	151	14	23	17	44	1.86
957285--957321	14	2.6	14	91	0	65	45	21	0	32	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
957316--957387	12	6.0	12	67	23	53	58	16	1	23	1.46
959231--959287	14	3.7	14	77	20	60	45	22	21	10	1.82
959212--959303	33	2.8	33	93	1	159	46	21	20	10	1.81
959175--959308	19	7.6	19	77	16	119	45	23	19	11	1.82
959304--959393	33	2.8	32	90	6	137	7	18	27	45	1.77
959304--959429	19	7.3	19	73	19	105	8	17	28	45	1.78
959473--959848	93	4.1	93	95	3	708	46	18	13	22	1.83
959473--959848	181	2.0	185	96	2	706	46	18	13	22	1.83
961543--961632	14	5.7	14	74	23	81	42	23	25	8	1.83
961535--961649	33	3.5	33	95	0	212	45	20	24	9	1.81
961542--961654	19	6.8	18	72	23	88	43	22	24	9	1.83
961839--961909	33	2.2	33	92	0	115	47	18	22	11	1.80
962090--962144	22	2.5	22	81	0	74	20	16	40	23	1.91
962286--962479	20	9.6	20	82	5	221	19	19	25	35	1.95
962286--962479	60	3.2	60	83	0	253	19	19	25	35	1.95
962472--962548	21	3.7	20	70	13	57	27	16	23	32	1.96
962534--962585	20	2.6	20	96	0	95	21	13	26	38	1.90
968830--968887	23	2.6	22	86	5	80	51	10	20	17	1.74
970160--970194	2	17.5	2	100	0	70	48	0	0	51	1.00
980005--980046	20	2.0	22	90	9	70	71	0	9	19	1.13
980142--980202	12	5.2	12	76	4	52	42	3	3	50	1.34
980120--980201	34	2.4	34	84	10	105	42	4	3	48	1.42
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
980121--980206	35	2.5	34	81	9	104	43	4	3	48	1.40

Tables:   1   2   3   4

The End!