genome.fa.s8479.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008479.1 Hibiscus syriacus cultivar Beakdansim tig00111310_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  457438

Tables:   1   2   3   

This is table  2  of  3  ( 272 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
211876--211918	20	2.2	20	87	4	61	16	18	23	41	1.89
211904--211937	14	2.4	14	85	0	50	8	23	20	47	1.78
212059--212095	14	2.6	14	91	0	65	45	24	0	29	1.53
213454--213520	21	3.2	21	68	4	55	19	20	35	23	1.95
213454--213576	42	2.9	41	80	7	113	22	17	36	22	1.95
215581--215607	14	1.9	14	100	0	54	51	14	14	18	1.76
215617--215715	33	3.0	33	87	1	135	39	24	23	13	1.90
215687--215776	19	4.7	19	90	2	144	47	21	20	11	1.80
216316--216368	20	2.7	20	93	0	88	26	20	28	24	1.99
216377--216430	20	2.7	20	94	0	90	27	18	22	31	1.97
216501--216541	21	2.0	21	85	0	55	34	31	17	17	1.93
219997--220041	3	15.0	3	90	0	72	4	28	0	66	1.11
219996--220040	15	3.0	15	100	0	90	6	26	0	66	1.16
221388--221514	50	2.5	50	81	6	150	15	32	33	18	1.93
221551--221644	47	2.0	47	87	4	134	28	21	20	29	1.98
221526--221644	49	2.5	48	82	5	143	26	21	22	28	1.99
227284--227504	110	2.0	111	91	0	363	46	8	8	36	1.65
227628--227668	10	4.1	10	84	12	57	39	0	29	31	1.57
227779--227910	51	2.6	51	84	1	149	21	32	28	16	1.96
229535--229579	24	2.0	24	91	8	76	37	15	13	33	1.86
242269--242304	13	2.9	13	92	8	58	0	13	13	72	1.13
252806--252846	20	2.0	20	86	9	57	31	0	4	63	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
253325--253360	2	18.0	2	100	0	72	50	0	0	50	1.00
254923--254967	20	2.2	20	100	0	90	13	8	35	42	1.75
256574--256655	37	2.2	37	86	0	110	28	21	18	31	1.97
258659--258706	8	5.7	9	77	18	50	45	18	10	25	1.81
260568--260635	33	2.1	32	88	2	100	33	25	29	11	1.91
260576--260648	33	2.2	33	82	0	92	36	27	24	10	1.89
263420--263473	19	2.8	19	83	8	65	24	16	27	31	1.96
264661--264690	2	15.0	2	100	0	60	50	0	0	50	1.00
265084--265143	23	2.6	23	89	0	102	16	26	25	31	1.96
268400--268557	64	2.5	63	84	8	194	31	18	25	24	1.97
268568--268605	20	1.9	20	94	0	67	31	18	23	26	1.97
270221--270288	23	3.0	23	86	0	100	17	26	26	29	1.98
275385--275414	15	2.0	15	93	0	51	13	3	0	83	0.77
276534--276577	10	4.4	10	88	5	63	15	0	0	84	0.63
276541--276576	16	2.2	16	95	0	63	13	0	0	86	0.58
279209--279250	19	2.3	19	92	8	70	19	0	0	80	0.70
279209--279250	9	4.7	9	91	8	68	19	0	0	80	0.70
279208--279251	10	4.4	10	83	11	63	20	0	0	79	0.73
282710--282764	18	3.1	17	78	17	67	80	7	12	0	0.91
282707--282754	21	2.3	20	92	3	78	81	6	12	0	0.87
282707--282770	21	3.0	21	82	13	62	78	7	12	1	1.03
283825--283860	18	2.0	18	94	0	63	16	8	33	41	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
284595--284666	37	1.9	37	85	0	99	26	20	12	40	1.88
285271--285696	106	4.0	106	91	0	656	34	24	19	21	1.96
287113--287142	16	1.9	15	93	6	51	26	3	0	70	1.03
287111--287177	10	6.4	11	81	10	52	37	1	0	61	1.05
287129--287179	6	8.5	6	89	6	50	41	0	0	58	0.98
287135--287176	2	21.5	2	90	4	68	45	0	0	54	0.99
288847--288900	27	2.0	28	85	10	76	40	7	0	51	1.30
288922--288973	15	3.5	15	76	5	52	71	0	1	26	0.97
292688--292757	32	2.2	32	92	0	113	34	17	20	28	1.95
292698--292779	32	2.5	32	78	2	92	41	17	14	26	1.88
293506--293564	30	2.0	30	86	3	84	38	27	6	27	1.81
293982--294017	17	2.1	17	89	0	54	52	8	2	36	1.46
294179--294499	138	2.3	141	86	2	441	35	11	11	41	1.79
294328--294392	29	2.2	29	88	0	94	35	12	9	43	1.74
294357--294658	112	2.7	113	88	2	464	32	11	13	43	1.79
296001--296074	32	2.3	32	80	0	85	32	18	16	32	1.93
296464--296511	16	3.3	16	67	27	52	25	29	22	22	1.99
296459--296522	27	2.4	27	97	0	119	25	29	23	21	1.99
296682--296720	12	3.3	12	78	7	53	25	17	15	41	1.89
296647--296728	23	3.8	22	80	18	100	28	20	17	34	1.95
299114--299174	7	8.9	7	76	3	61	18	1	32	47	1.58
299284--299346	11	5.9	11	73	14	51	38	1	0	60	1.07
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
300956--301024	23	3.0	23	93	0	120	34	26	24	14	1.94
301741--301767	2	13.5	2	100	0	54	51	0	0	48	1.00
302200--302248	23	2.1	23	84	0	62	34	14	6	44	1.70
305293--305334	19	2.2	19	86	0	57	19	30	0	50	1.48
308006--308049	23	1.9	23	85	0	61	36	11	4	47	1.60
308013--308061	23	2.1	23	84	0	62	34	14	6	44	1.70
310690--310721	16	2.0	16	93	0	55	40	18	0	40	1.51
314545--314576	15	2.0	17	88	11	50	31	15	6	46	1.71
314941--314965	2	12.5	2	100	0	50	52	0	0	48	1.00
321196--321227	2	15.5	2	93	6	55	50	3	0	46	1.17
321584--321647	23	2.8	23	80	0	83	32	26	26	14	1.94
321877--321935	30	2.0	29	83	3	73	33	22	6	37	1.80
328094--328210	62	1.9	62	96	0	216	14	36	19	29	1.91
328695--328735	21	2.0	21	90	0	64	29	0	17	53	1.44
329160--329186	14	1.9	14	100	0	54	7	3	14	74	1.18
329216--329374	82	1.9	83	92	1	266	37	3	8	50	1.52
329341--329401	17	3.4	17	74	24	61	42	0	9	47	1.36
329352--329394	23	1.9	23	86	13	63	39	0	9	51	1.34
329362--329405	23	2.0	23	81	4	54	43	0	6	50	1.29
332454--332594	46	3.0	46	87	5	187	41	0	12	46	1.41
332582--332795	11	19.4	11	68	22	76	41	0	10	47	1.44
332585--332668	16	5.3	15	74	18	55	36	0	11	51	1.39
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
332585--332793	34	5.9	33	71	21	110	40	0	10	47	1.44
332692--332734	8	5.2	8	83	11	52	39	0	11	48	1.40
332624--332793	79	2.2	76	86	12	231	41	1	10	47	1.46
332678--332911	23	10.2	23	73	16	157	45	2	7	43	1.47
332777--332875	14	7.1	14	72	19	82	51	3	5	40	1.39
332780--332817	20	1.9	20	94	0	67	55	2	5	36	1.37
332746--332911	25	7.0	26	76	17	157	48	3	6	42	1.45
332755--332924	35	4.8	34	72	18	134	48	3	5	42	1.44
333036--333069	17	2.0	17	94	0	59	38	0	0	61	0.96
335413--335473	11	5.5	11	77	14	63	36	13	1	49	1.52
335406--335476	22	3.2	22	97	0	133	36	14	1	47	1.52
335449--335497	15	3.2	16	71	11	57	42	12	0	44	1.41
335450--335515	30	2.2	30	89	8	98	45	12	1	40	1.51
335697--335736	21	1.9	21	100	0	80	57	15	0	27	1.38
335766--335820	18	3.4	18	65	31	52	52	9	0	38	1.33
336062--336112	21	2.3	23	90	9	81	52	15	0	31	1.43
335453--336156	365	1.9	361	82	10	885	46	12	1	39	1.50
336188--336225	9	4.2	9	90	10	60	68	0	0	31	0.90
336408--336488	23	3.5	23	94	0	144	44	12	17	25	1.84
336565--336648	29	2.9	29	90	0	132	16	29	29	23	1.96
336699--336760	30	2.1	30	90	0	97	30	32	24	12	1.93
337353--337414	31	2.0	31	87	6	90	53	1	8	37	1.40
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
337366--337464	26	3.6	26	76	16	76	46	0	11	42	1.39
338355--338400	21	2.2	21	84	0	56	19	15	2	63	1.41
340867--340919	21	2.5	21	96	0	97	26	39	0	33	1.57
342876--342912	19	1.9	19	88	0	56	13	27	35	24	1.93
342894--342955	23	2.8	22	82	4	79	19	24	32	24	1.98
349189--349231	20	2.2	20	100	0	86	34	27	13	23	1.93
350608--350633	12	2.2	12	100	0	52	50	26	7	15	1.71
371446--371543	49	2.0	49	94	4	171	35	2	7	55	1.39
375297--375334	18	2.1	18	90	0	58	0	42	2	55	1.14
382798--382824	8	3.4	8	100	0	54	48	0	0	51	1.00

Tables:   1   2   3