genome.fa.s8479.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008479.1 Hibiscus syriacus cultivar Beakdansim tig00111310_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  457438

Tables:   1   2   3   

This is table  3  of  3  ( 272 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
385793--385838	17	2.7	17	89	0	74	19	13	8	58	1.60
386944--386985	20	2.0	21	82	13	52	30	2	2	64	1.19
387056--387089	16	2.1	17	88	5	52	64	0	0	35	0.94
387080--387112	17	1.9	17	100	0	66	72	0	0	27	0.85
392888--392929	22	1.9	22	85	0	57	61	9	4	23	1.45
397848--397907	29	2.1	29	100	0	120	23	13	13	50	1.77
402473--402532	29	2.1	29	100	0	120	23	13	13	50	1.77
410461--410523	30	2.1	31	85	8	85	46	1	1	50	1.20
410740--410769	14	2.1	15	93	6	53	43	0	6	50	1.28
421321--421394	38	1.9	38	88	0	112	27	9	18	44	1.81
422069--422107	11	3.5	11	93	6	62	74	7	2	15	1.15
424144--424202	30	2.0	30	86	6	84	55	15	10	18	1.67
424938--424969	15	2.1	15	94	0	55	34	15	18	31	1.93
424949--424989	20	2.0	20	100	0	82	29	19	19	31	1.96
425019--425069	25	2.0	26	92	3	86	21	33	35	9	1.86
425488--425516	15	1.9	15	100	0	58	20	0	44	34	1.52
433172--433230	23	2.6	23	88	0	91	40	6	18	33	1.77
433416--433462	20	2.3	20	75	7	51	17	21	12	48	1.79
433390--434038	182	3.6	180	84	4	793	27	16	12	42	1.85
436622--436656	15	2.4	15	95	4	63	65	11	5	17	1.43
436741--436818	28	2.7	30	90	6	92	46	6	3	43	1.47
436753--436818	28	2.4	28	97	0	123	45	7	3	43	1.47
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
438952--439199	105	2.4	105	96	0	451	22	21	18	37	1.94
440183--440430	52	4.6	53	76	6	187	39	19	10	30	1.85
440651--440765	36	3.2	36	81	3	115	37	14	20	26	1.92
440893--441086	37	5.4	37	72	11	154	41	9	18	30	1.82
445574--445605	15	2.1	15	94	0	55	65	6	9	18	1.42
446272--446330	30	1.9	31	86	3	84	62	3	1	32	1.21
450367--450407	18	2.3	19	79	12	50	58	9	7	24	1.55
451297--451458	80	2.1	77	85	10	213	39	16	13	30	1.87
457015--457053	8	5.0	8	81	6	53	33	0	28	38	1.57
457120--457425	127	2.4	127	96	2	564	21	25	19	32	1.97

Tables:   1   2   3

The End!