genome.fa.s8484.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008484.1 Hibiscus syriacus cultivar Beakdansim tig00111318_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  688492

Tables:   1   2   3   4   

This is table  2  of  4  ( 393 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
126857--127003	16	8.7	16	75	16	111	79	2	17	0	0.87
129254--129479	114	2.0	114	92	1	373	32	15	20	30	1.94
130388--130454	35	1.9	35	85	11	93	32	10	22	34	1.88
131518--131679	54	3.0	54	93	1	263	35	15	24	24	1.94
132031--132085	22	2.5	22	87	0	83	34	14	14	36	1.87
132484--132808	113	2.9	113	86	3	447	40	14	17	27	1.89
132747--132848	40	2.6	40	93	1	179	50	8	22	17	1.73
132636--132961	155	2.1	153	89	3	494	41	12	20	25	1.87
132791--133089	113	2.6	113	93	0	490	37	14	20	27	1.91
132517--133076	268	2.1	266	89	2	836	40	13	19	26	1.89
133351--133427	3	25.7	3	80	17	81	37	1	0	61	1.05
133380--133439	29	2.1	29	83	0	75	45	1	0	53	1.10
134963--135002	20	2.1	19	85	4	53	32	0	2	65	1.06
134858--135095	119	2.0	118	82	5	293	37	7	8	46	1.63
158549--158595	22	2.1	22	84	4	58	38	27	12	21	1.90
165443--165515	38	1.9	38	88	0	110	12	8	23	56	1.63
167494--167530	6	6.2	6	90	9	58	48	16	16	18	1.81
167494--167530	13	3.1	12	88	11	58	48	16	16	18	1.81
173715--173747	15	2.2	15	89	10	50	78	3	0	18	0.87
175719--175768	25	2.0	26	84	11	68	66	2	0	32	1.03
183628--183676	25	1.9	26	83	4	64	51	8	8	32	1.61
184685--184811	60	2.1	60	82	4	150	31	12	16	39	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
186736--186898	65	2.5	66	83	3	206	27	15	26	30	1.96
186846--186884	19	2.1	19	85	0	51	28	12	35	23	1.91
186740--186946	65	3.2	65	78	12	178	27	16	25	30	1.97
187273--187331	28	2.0	30	87	9	86	38	33	1	25	1.66
195337--195499	65	2.5	66	85	3	224	26	15	26	30	1.96
195447--195497	19	2.7	19	85	8	70	25	15	35	23	1.94
195341--195547	65	3.2	65	80	12	187	27	17	25	29	1.97
196970--197020	22	2.3	22	83	6	59	58	5	3	31	1.40
197727--197782	21	2.7	21	80	0	67	53	7	3	35	1.46
200120--200169	25	2.0	25	96	0	91	38	14	8	40	1.75
215883--216409	263	2.0	266	98	1	1033	29	20	22	28	1.98
225981--226062	21	3.8	21	73	17	53	14	25	37	21	1.92
229520--229587	22	3.0	22	97	2	127	26	27	26	19	1.99
230211--230364	66	2.3	64	87	4	209	18	27	26	27	1.98
236198--236265	22	3.0	22	97	2	127	26	27	26	19	1.99
236874--237024	67	2.3	67	88	2	214	17	27	27	27	1.98
243936--244008	23	3.3	22	78	16	80	26	26	21	26	2.00
249520--249557	20	1.9	20	84	10	51	18	5	15	60	1.53
268621--268662	22	1.9	22	95	0	75	26	35	14	23	1.93
270764--270854	21	4.3	21	83	5	112	23	36	17	23	1.95
270762--270841	42	1.9	42	92	0	133	20	38	20	21	1.93
270764--270854	42	2.2	42	87	0	128	23	36	17	23	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
272203--272351	64	2.3	64	92	0	244	28	2	16	52	1.55
272410--272493	20	4.2	20	75	6	89	33	23	20	22	1.97
272750--272784	6	5.8	6	86	0	52	17	2	20	60	1.49
272743--272783	18	2.3	18	95	0	73	17	2	24	56	1.53
274843--274872	12	2.5	12	88	0	51	0	23	0	76	0.78
276056--276156	20	4.9	20	72	13	73	33	14	22	28	1.94
276048--276227	40	4.4	41	74	13	122	31	15	23	30	1.95
277817--277841	13	1.9	13	100	0	50	36	16	24	24	1.94
278980--279023	2	22.0	2	100	0	88	50	0	0	50	1.00
282091--282230	30	4.8	29	72	9	106	60	9	11	18	1.56
283997--284028	16	2.0	16	93	0	55	34	0	0	65	0.93
292723--292772	20	2.5	20	100	0	100	44	26	14	16	1.85
294775--294804	14	2.1	14	100	0	60	33	0	23	43	1.54
294704--294868	78	2.1	78	89	0	249	29	2	18	50	1.59
294983--295057	29	2.6	29	85	4	107	29	24	16	30	1.96
297519--297571	24	2.2	24	89	0	79	37	20	20	20	1.94
297698--297731	12	2.8	12	90	0	50	14	0	29	55	1.40
298326--298363	16	2.5	15	84	12	51	65	0	5	28	1.14
298539--298601	20	3.2	20	93	4	101	34	14	23	26	1.93
298552--298691	20	6.9	20	79	6	86	30	10	26	32	1.90
298940--298979	2	20.0	2	100	0	80	50	0	0	50	1.00
301130--301339	107	2.0	104	86	6	289	40	25	20	13	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
309696--309768	30	2.4	31	77	9	87	17	13	16	52	1.75
310813--310880	31	2.2	31	89	0	100	51	10	8	29	1.66
311685--311736	3	17.0	3	80	4	59	34	7	0	57	1.27
311690--311736	9	5.2	9	86	0	67	34	8	0	57	1.29
311699--311737	15	2.6	15	95	0	69	33	10	0	56	1.33
320089--320187	52	1.9	52	87	0	144	38	17	17	27	1.91
321534--321931	40	10.0	40	91	1	629	30	16	11	41	1.84
321922--322038	37	3.2	37	87	2	155	27	18	13	40	1.89
322072--322195	65	1.9	66	90	5	198	29	19	13	37	1.90
321934--322226	101	2.9	101	86	3	392	28	19	12	39	1.88
321922--322289	36	10.5	35	72	16	228	27	19	12	39	1.88
322166--322338	74	2.4	73	85	1	229	24	22	12	41	1.88
322319--322359	15	2.7	15	88	0	64	26	26	19	26	1.99
322349--322468	60	2.0	61	83	8	156	34	18	10	37	1.84
322843--323169	117	2.8	118	85	2	469	37	15	22	24	1.93
323099--323163	20	3.3	20	67	18	55	44	12	21	21	1.85
323191--323254	17	3.3	19	67	20	51	43	12	20	23	1.85
323404--323482	3	26.0	3	84	2	104	35	5	0	59	1.19
327588--327624	19	1.9	19	89	10	58	21	16	0	62	1.33
327687--327736	19	2.6	19	81	6	57	32	18	6	44	1.74
330629--330686	31	1.9	30	89	10	91	31	17	12	39	1.86
332020--332073	25	2.2	25	89	0	81	44	12	7	35	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
332429--332481	24	2.1	26	86	13	76	28	0	1	69	0.99
332429--332481	26	2.1	24	83	13	63	28	0	1	69	0.99
338041--338084	23	1.9	23	95	0	79	22	25	27	25	2.00
344499--344664	20	8.2	20	74	12	135	40	23	19	16	1.90
344501--344655	82	1.9	81	81	6	188	39	24	20	16	1.92
344760--344791	6	5.5	6	96	3	57	31	53	15	0	1.43
345285--345407	6	20.5	6	99	0	201	4	12	50	33	1.58
347508--347596	38	2.3	38	90	3	135	11	11	38	39	1.77
347572--348099	168	3.1	169	93	1	920	33	12	14	39	1.84
357742--357788	20	2.4	19	79	10	58	53	8	17	21	1.70
357530--358002	181	2.6	182	90	0	723	42	13	17	27	1.86
357923--357969	20	2.4	19	82	10	67	53	10	17	19	1.72
357934--357974	20	2.2	19	83	12	50	51	14	17	17	1.77
360199--360281	21	4.0	21	95	0	139	42	10	28	18	1.84
360315--360383	33	2.1	33	91	0	111	28	0	47	23	1.52
360656--361244	183	3.2	183	95	1	1038	34	15	16	33	1.90
361118--361364	120	2.1	120	94	0	431	31	14	15	38	1.88
360935--361831	303	3.0	303	97	0	1668	33	14	16	34	1.90
361421--361667	120	2.1	120	94	0	431	32	14	15	37	1.87
360656--361831	486	2.4	484	78	9	1404	34	14	16	34	1.90
365181--365434	87	2.9	87	95	2	458	33	14	9	42	1.78
365265--365309	23	2.0	23	86	0	63	37	15	8	37	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
365342--365386	23	2.0	23	90	0	72	33	13	8	44	1.75
365352--365396	23	2.0	23	86	0	63	37	15	8	37	1.79
365603--365670	31	2.3	29	78	16	68	45	5	4	44	1.48
365705--365771	31	2.2	29	81	5	80	46	2	2	47	1.33
370925--370967	17	2.8	16	83	13	54	30	2	4	62	1.28
370892--370971	42	1.9	42	87	7	119	30	2	3	63	1.25
372735--372820	22	4.0	22	82	7	95	43	12	19	24	1.86
373352--373418	33	2.0	33	91	0	107	44	14	7	32	1.74
373414--373454	21	2.0	21	95	0	73	51	4	14	29	1.63
376880--376930	23	2.2	23	89	0	75	50	19	17	11	1.76

Tables:   1   2   3   4