Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008484.1 Hibiscus syriacus cultivar Beakdansim tig00111318_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  688492

Tables:   1   2   3   4   

This is table  4  of  4  ( 393 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
636219--636288
20
3.5
20
90
2
104
38
25
18
17
1.92
636302--636355
19
2.8
19
80
5
56
50
24
14
11
1.75
636352--636389
20
1.9
20
94
0
67
13
21
18
47
1.82
636355--636430
33
2.3
34
86
2
109
14
19
19
46
1.84
636422--636470
20
2.5
20
89
0
71
20
20
24
34
1.96
636457--636500
20
2.2
20
91
0
70
15
13
20
50
1.78
636982--637058
21
3.7
21
75
6
84
22
36
18
23
1.95
636976--637098
42
2.9
42
82
0
129
22
35
17
23
1.95
636980--637083
21
5.0
20
75
3
82
21
34
19
25
1.96
638411--638447
14
2.6
14
100
0
74
29
0
21
48
1.50
638567--638640
20
3.7
20
81
3
78
44
25
16
13
1.84
638679--638887
20
11.1
20
72
19
162
24
16
22
36
1.94
638643--638887
54
4.4
53
81
7
249
24
16
22
36
1.94
638683--638876
74
2.6
73
75
8
212
24
16
23
36
1.94
638683--638887
40
5.4
40
75
16
186
25
16
22
36
1.94
638858--639140
140
2.0
140
97
0
539
43
14
13
28
1.83
639198--639232
18
1.9
18
94
0
61
17
2
25
54
1.57
640725--640835
20
5.5
20
81
6
143
22
18
29
29
1.97
640725--640836
41
2.8
41
89
4
165
22
17
29
30
1.97
640942--640978
19
1.9
19
88
0
56
24
16
27
32
1.96
641136--641162
6
4.5
6
100
0
54
14
29
18
37
1.91
641200--641251
6
8.7
6
100
0
104
82
0
0
17
0.66
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
650646--650724
21
3.7
21
94
1
131
22
39
22
15
1.91
652620--652659
21
1.9
21
90
10
64
57
7
5
30
1.48
659009--659052
22
2.0
22
82
4
54
22
43
22
11
1.85
669201--669232
2
16.0
2
100
0
64
0
50
0
50
1.00
675112--675164
3
18.0
3
90
3
72
60
0
0
39
0.97
675506--676173
113
6.0
114
87
4
880
28
18
14
38
1.90
675506--676173
222
3.0
223
87
3
920
28
18
14
38
1.90
676857--677165
113
2.8
113
95
3
536
32
22
12
32
1.92
678308--678365
8
7.9
7
83
12
64
0
15
0
84
0.62
678306--678369
18
3.4
19
77
18
80
0
15
0
84
0.63
678306--678364
20
2.9
20
90
7
84
0
15
0
84
0.62

Tables:   1   2   3   4

The End!