genome.fa.s8520.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008520.1 Hibiscus syriacus cultivar Beakdansim tig00111387_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  519447

Tables:   1   2   3   

This is table  3  of  3  ( 289 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
354338--354883	294	1.9	291	97	1	1029	34	15	17	32	1.91
354877--355519	326	2.0	327	88	3	974	41	13	13	31	1.84
360232--360271	21	1.9	21	89	0	62	10	25	40	25	1.86
360252--360303	23	2.3	23	77	6	63	19	21	38	21	1.94
364098--364137	21	1.9	21	85	10	55	35	10	2	52	1.48
368967--369014	9	5.0	9	78	12	51	20	0	4	75	0.97
368966--369018	20	2.7	19	83	11	72	20	0	3	75	0.96
368966--369018	10	5.3	10	77	6	54	20	0	3	75	0.96
369011--369056	16	3.0	16	78	15	53	54	0	4	41	1.20
370981--371017	12	3.0	13	84	15	60	48	16	16	18	1.81
371274--371398	49	2.6	49	78	5	128	30	17	23	28	1.97
372358--372416	2	29.5	2	100	0	118	50	0	0	49	1.00
373589--373631	21	2.0	21	100	0	86	30	32	4	32	1.78
377191--377251	22	2.8	22	97	0	113	14	9	34	40	1.79
378690--378728	20	2.0	20	89	0	60	43	2	17	35	1.63
381300--381506	105	2.0	105	97	1	389	32	25	12	29	1.92
382317--382349	16	2.1	16	94	0	57	33	21	12	33	1.90
384504--384567	26	2.5	26	78	16	71	51	4	3	40	1.38
384511--384576	26	2.7	25	82	11	75	51	3	4	40	1.38
384545--384697	38	3.9	41	78	13	144	44	3	5	45	1.46
384545--384695	81	1.9	77	82	10	189	44	3	5	46	1.44
387122--387162	21	2.0	21	100	0	82	31	14	14	39	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
407916--407948	14	2.4	14	94	0	57	9	24	21	45	1.80
417534--417897	166	2.2	166	100	0	728	45	6	9	38	1.62
422983--423047	28	2.3	29	79	10	73	67	4	0	27	1.10
424616--424657	2	21.0	2	100	0	84	50	0	0	50	1.00
435699--435733	5	6.8	5	87	6	52	34	0	0	65	0.93
435692--435742	15	3.3	15	76	10	50	31	0	0	68	0.90
437277--437338	31	2.2	28	81	16	74	17	24	29	29	1.97
439994--440122	30	4.3	29	87	2	150	13	44	23	18	1.84
439994--440122	60	2.2	60	85	5	172	13	44	23	18	1.84
448869--448898	3	10.0	3	92	0	51	33	0	3	63	1.11
465237--465263	3	9.0	3	100	0	54	66	0	0	33	0.92
466222--466384	41	4.4	36	85	13	167	38	11	26	23	1.89
466228--466354	41	3.1	41	97	0	236	37	11	28	22	1.89
466310--466383	34	2.2	33	90	2	112	40	10	24	24	1.87
472351--472385	16	2.1	17	94	5	63	31	8	25	34	1.86
481905--481967	20	3.2	19	78	14	58	33	3	4	58	1.35
481905--481969	19	3.3	19	75	16	60	33	3	4	58	1.34
489542--489586	19	2.5	18	85	7	56	26	2	0	71	0.98
489654--489698	21	2.2	20	84	4	54	35	2	0	62	1.08
490166--490230	26	2.5	25	82	9	76	38	1	0	60	1.07
490148--490265	63	1.9	59	85	13	159	39	2	0	57	1.12
490187--490268	36	2.3	35	81	6	94	42	1	0	56	1.07
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
490672--490704	11	3.0	11	90	0	57	33	36	12	18	1.88
494600--494677	35	2.2	35	81	4	86	39	11	24	24	1.88
500114--500179	23	2.9	22	84	6	78	24	24	28	22	1.99
507388--507704	158	2.0	156	90	2	501	41	12	15	31	1.84
514258--514335	40	2.0	40	94	0	138	50	7	6	35	1.57

Tables:   1   2   3

The End!