genome.fa.s8525.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008525.1 Hibiscus syriacus cultivar Beakdansim tig00111394_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  732385

Tables:   1   2   3   

This is table  2  of  3  ( 352 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
269504--269608	45	2.3	46	90	1	158	29	20	13	37	1.90
269504--269582	25	3.4	25	68	22	71	29	17	12	40	1.87
275650--275697	23	2.1	23	88	0	69	35	12	18	33	1.89
276113--276186	23	3.2	23	81	7	87	41	21	4	32	1.72
276332--276396	29	2.2	29	81	10	71	44	0	3	52	1.16
275764--276817	428	2.5	430	97	0	2022	38	12	7	41	1.70
276552--276614	23	2.7	23	87	0	90	38	22	4	34	1.75
277032--277117	39	2.2	39	91	0	136	18	12	18	50	1.78
277375--277411	18	2.1	18	89	0	56	51	10	5	32	1.60
277849--277911	23	2.7	23	87	0	90	38	22	4	34	1.75
278257--278322	25	2.6	25	80	0	87	42	13	9	34	1.76
280787--281277	183	2.7	182	93	1	833	33	17	14	34	1.90
282779--282859	3	27.0	3	75	0	72	23	34	6	35	1.80
282783--282871	12	7.4	12	84	0	88	21	34	7	35	1.82
282783--282874	18	5.1	18	77	0	76	20	34	7	36	1.81
282795--282871	36	2.1	36	90	0	118	20	35	9	35	1.85
282783--282874	6	15.3	6	79	0	67	20	34	7	36	1.81
284336--285306	199	4.9	199	96	1	1772	31	16	15	36	1.90
284336--285306	400	2.4	398	96	1	1781	31	16	15	36	1.90
285425--285473	19	2.6	19	93	0	80	57	10	2	30	1.43
287266--287331	33	2.0	33	87	0	96	22	46	0	30	1.52
287365--287429	21	3.1	21	79	0	76	16	30	13	38	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
289654--289696	20	2.3	18	85	14	61	20	16	11	51	1.75
289841--289887	20	2.3	20	89	10	78	17	17	10	55	1.69
289626--290099	182	2.6	181	88	1	662	26	16	13	43	1.86
290166--290654	229	2.1	229	94	0	863	39	7	7	45	1.61
294359--294586	118	1.9	117	89	0	348	34	20	9	35	1.85
298216--298272	29	2.0	27	83	12	71	59	0	1	38	1.08
298337--298384	3	17.0	3	79	12	57	64	0	4	31	1.12
298337--298384	11	4.3	11	78	5	60	64	0	4	31	1.12
298342--298380	20	2.0	20	89	0	60	61	0	5	33	1.18
298407--298456	22	2.4	21	76	6	57	72	0	4	24	1.02
298416--298452	16	2.2	16	90	4	56	78	0	5	16	0.93
301783--301905	20	6.1	20	74	10	99	15	21	21	41	1.90
301871--301911	19	2.2	19	100	0	82	19	21	17	41	1.90
301983--302070	19	4.5	19	77	8	104	39	20	19	20	1.92
302087--302155	20	3.4	20	72	4	75	40	24	20	14	1.90
302103--302176	21	3.6	21	74	3	87	35	27	17	20	1.95
302087--302180	41	2.3	41	96	0	179	38	24	19	18	1.93
302087--302184	21	4.8	21	70	3	83	38	25	18	17	1.92
304470--304684	3	72.0	3	72	0	54	59	21	9	9	1.57
304433--304652	39	5.3	39	87	9	280	58	20	11	9	1.59
304433--304579	48	3.2	48	85	14	213	58	21	12	7	1.58
304446--304641	12	16.4	12	66	15	66	58	20	11	10	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
304563--304673	21	5.3	21	67	6	73	59	21	7	11	1.56
304479--304680	39	5.1	39	86	4	208	58	21	9	10	1.59
304933--304970	18	2.1	18	90	5	58	55	0	0	44	0.99
304998--305054	30	1.9	30	88	0	87	52	5	7	35	1.51
306249--306336	43	2.0	43	100	0	176	12	31	34	21	1.91
310151--310213	20	3.2	19	86	4	81	14	34	17	33	1.90
312864--313038	85	2.1	85	98	0	341	38	14	22	24	1.91
317191--317221	14	2.1	15	94	5	55	70	0	0	29	0.87
325533--325629	37	2.6	37	83	0	131	40	15	10	34	1.81
326091--326121	2	15.5	2	93	0	53	45	0	3	51	1.17
326288--326414	57	2.2	58	77	13	138	29	2	2	66	1.17
326334--326425	23	4.3	21	73	17	59	29	3	1	66	1.14
326360--326443	20	4.3	21	68	23	58	32	3	0	64	1.11
326372--326445	14	5.2	14	72	18	55	32	4	0	63	1.13
326323--326445	57	2.1	57	82	12	146	29	4	0	65	1.16
326348--326442	28	3.3	27	71	11	75	32	4	1	62	1.22
326529--326584	19	2.9	19	75	19	62	23	8	1	66	1.30
327220--328228	106	9.5	106	90	1	1495	34	25	17	22	1.96
328979--329082	37	2.8	37	85	0	136	40	14	13	31	1.85
329733--329801	30	2.4	27	77	13	68	27	4	4	63	1.32
329792--329925	11	12.1	11	73	18	68	28	4	0	66	1.16
329835--329894	24	2.6	22	82	10	75	30	1	0	68	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
329835--329927	22	4.2	22	75	12	84	29	3	0	67	1.06
333727--333814	29	3.0	29	98	0	167	27	7	23	40	1.82
335871--335931	29	2.1	30	90	3	97	49	6	8	36	1.59
346117--346154	19	2.0	19	100	0	76	31	26	0	42	1.56
346116--346158	19	2.4	18	88	11	70	32	25	0	41	1.56
349612--349643	15	2.1	15	94	0	55	50	0	6	43	1.27
349816--349876	31	2.0	31	96	0	113	44	0	11	44	1.40
357004--357302	152	2.0	147	94	4	528	35	17	16	29	1.92
361164--361203	2	20.0	2	94	0	71	50	0	2	47	1.14
362666--362887	111	2.0	111	93	0	381	45	10	8	35	1.70
363059--363108	21	2.4	21	96	0	91	28	0	46	26	1.53
363155--363261	50	2.1	50	83	11	130	23	28	29	17	1.97
364526--364564	2	19.5	2	100	0	78	48	0	0	51	1.00
364689--364726	14	2.8	14	88	4	51	44	2	5	47	1.39
366688--366774	39	2.3	38	82	6	95	37	13	1	47	1.51
370024--370101	30	2.5	31	76	10	88	38	16	16	28	1.91
375813--375873	23	2.7	23	94	0	113	27	16	31	24	1.96
377954--378029	23	3.3	23	68	17	77	50	11	0	38	1.39
377954--378025	22	3.2	22	67	18	67	51	11	0	37	1.38
377950--378044	45	2.2	43	92	5	156	50	10	0	38	1.37
377978--378044	21	3.2	21	68	29	61	52	10	0	37	1.36
382402--382448	22	2.1	22	84	7	60	61	4	17	17	1.49
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
385139--385183	22	2.0	22	83	12	56	48	0	4	46	1.22
385560--385734	60	2.9	60	81	8	196	33	20	5	40	1.75
385871--386059	60	3.2	59	75	15	149	42	4	20	32	1.73
388202--388243	19	2.2	19	95	0	75	83	0	0	16	0.65
388203--388242	12	3.3	12	86	6	55	82	0	0	17	0.67
389176--389262	28	3.1	27	76	11	86	28	9	8	54	1.61
391273--391444	60	2.8	60	85	3	211	32	22	5	39	1.78
393921--393968	9	5.4	9	78	14	55	31	2	0	66	1.03
396886--396926	2	21.0	2	95	5	75	48	0	0	51	1.00
402548--402598	2	25.5	2	100	0	102	50	0	0	49	1.00
403258--403308	23	2.2	23	96	0	93	43	17	19	19	1.89
426850--426879	15	2.0	15	93	0	51	30	0	16	53	1.44
434771--434865	31	3.0	32	87	4	140	13	14	36	34	1.86
434771--434878	31	3.5	32	86	6	132	15	15	35	33	1.90
436760--436842	41	2.0	40	90	6	132	27	28	3	39	1.73
437008--437370	181	2.0	181	100	0	726	26	21	12	38	1.89
439941--440024	3	28.3	3	95	2	152	66	1	0	32	0.99
450911--450978	23	3.0	23	86	0	91	20	26	26	26	1.99
452306--452436	59	2.2	59	83	5	158	33	18	16	32	1.93
457862--457899	18	2.2	17	86	13	51	65	5	13	15	1.43
460843--461001	39	4.1	39	92	0	255	30	23	11	33	1.91
463976--464029	21	2.5	22	84	6	74	44	18	16	20	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
469448--469579	68	2.0	67	95	1	237	50	8	8	32	1.62
470359--470415	28	2.0	28	89	0	87	29	12	22	35	1.91
472370--472407	18	2.1	18	90	9	60	55	7	0	36	1.29
481611--481714	53	2.0	52	90	1	163	34	15	15	34	1.89
481828--481868	22	2.0	20	90	9	64	34	4	9	51	1.56
485309--485365	19	3.0	19	97	0	105	31	5	28	35	1.79
485801--485877	21	3.8	21	81	6	104	32	25	18	23	1.97
485801--485891	21	4.6	20	78	8	96	31	24	18	25	1.97
485811--485888	40	2.0	40	94	0	138	32	24	20	23	1.98
486938--487001	27	2.4	27	84	5	67	53	9	12	25	1.68

Tables:   1   2   3