genome.fa.s8525.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008525.1 Hibiscus syriacus cultivar Beakdansim tig00111394_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  732385

Tables:   1   2   3   

This is table  3  of  3  ( 352 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
489993--490049	23	2.4	23	83	13	64	43	0	3	52	1.18
493386--493427	15	2.8	15	89	7	59	47	26	0	26	1.52
493432--493478	21	2.2	22	84	3	60	44	25	2	27	1.65
493396--493523	57	2.2	59	91	2	206	44	25	2	27	1.66
493545--493654	35	3.1	35	84	7	143	45	22	0	31	1.53
494037--494077	14	3.1	14	76	20	52	41	0	4	53	1.22
502225--502286	22	2.8	22	87	0	97	40	12	16	30	1.86
507431--507549	37	3.5	33	73	15	91	27	19	21	31	1.97
514831--514879	21	2.3	21	78	0	62	22	24	20	32	1.98
514962--514992	6	5.2	6	100	0	62	35	48	16	0	1.46
515622--515663	19	2.2	19	91	0	66	35	28	16	19	1.93
515585--515711	61	2.1	61	95	0	227	35	23	18	22	1.96
515588--515955	105	3.5	105	92	2	591	35	23	19	21	1.96
515613--515980	21	17.6	21	80	11	309	34	23	20	21	1.96
516213--516360	59	2.5	60	80	2	154	35	25	3	36	1.73
516245--516360	60	1.9	59	84	1	151	36	23	2	37	1.69
521593--521623	15	2.1	15	100	0	62	12	12	19	54	1.70
522145--522184	18	2.3	18	83	8	57	25	5	2	67	1.23
522431--522486	21	2.7	20	75	8	58	25	3	0	71	1.02
522678--522721	2	22.0	2	95	0	79	47	0	0	52	1.00
525300--525338	8	5.0	8	84	6	53	10	17	12	58	1.61
526521--526578	21	2.8	21	80	12	57	79	6	12	1	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
527215--527264	22	2.3	22	96	0	91	36	26	12	26	1.91
528087--529106	105	9.9	103	91	4	1573	33	26	18	22	1.97
528087--529116	204	5.0	206	92	3	1575	33	26	18	22	1.96
530261--530295	15	2.4	15	90	4	54	22	5	2	68	1.24
530543--530596	14	3.9	15	77	18	55	25	3	0	70	1.04
530779--530846	2	34.0	2	100	0	136	50	0	0	50	1.00
553092--553128	16	2.3	16	90	0	56	45	5	21	27	1.73
560694--560754	23	2.7	23	89	0	95	26	27	26	19	1.99
560770--560987	103	2.1	103	99	0	427	36	23	13	26	1.92
563307--563373	31	2.2	31	91	0	107	37	14	25	22	1.93
563315--563376	31	2.0	31	96	0	115	35	14	25	24	1.93
577360--577384	11	2.3	11	100	0	50	60	0	0	40	0.97
579972--580050	2	40.0	2	85	12	110	48	1	1	49	1.17
581005--581059	3	18.3	3	100	0	110	67	0	0	32	0.91
592425--592488	31	2.0	32	84	3	85	37	21	17	23	1.94
600934--600962	2	14.5	2	100	0	58	51	0	0	48	1.00
604299--604438	51	2.7	53	93	3	230	31	10	20	38	1.85
604589--604639	25	2.0	25	85	7	68	39	13	11	35	1.82
614583--614748	79	2.1	79	97	0	314	39	31	6	22	1.80
621055--621250	100	1.9	101	84	4	261	40	8	14	36	1.76
625935--626125	61	3.2	61	79	5	149	31	18	4	45	1.70
626275--626433	60	2.6	59	78	9	153	45	4	15	34	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
633773--633801	2	15.0	2	92	7	51	48	0	0	51	1.00
641291--641353	29	2.2	29	91	5	101	34	9	15	39	1.80
644075--644131	21	2.7	21	91	0	96	29	29	17	22	1.97
644075--644367	42	7.3	42	70	18	194	31	23	21	23	1.98
644135--644409	21	13.3	20	77	15	133	31	22	21	25	1.98
644169--644341	83	2.1	83	93	0	292	34	22	20	22	1.97
644143--644409	104	2.6	104	82	8	305	31	22	20	25	1.98
644357--644571	20	10.6	20	80	14	253	25	20	17	36	1.94
644349--644571	41	5.5	41	86	8	243	25	21	17	36	1.94
644272--644511	21	11.6	21	78	14	123	26	23	19	30	1.98
644398--644551	61	2.5	61	98	0	299	25	20	16	37	1.94
644559--644610	21	2.5	21	93	0	86	19	23	26	30	1.98
646788--647108	43	7.5	43	74	13	207	49	4	17	28	1.67
646841--647108	43	6.2	42	79	8	211	50	5	16	27	1.69
646802--647067	43	6.2	42	80	9	245	51	4	16	27	1.65
646802--647161	87	4.2	83	78	8	301	52	5	15	26	1.64
647154--647178	13	1.9	13	100	0	50	80	0	0	20	0.72
648230--648302	21	3.5	21	87	5	96	31	20	24	23	1.98
648292--648345	21	2.6	21	84	0	72	20	22	29	27	1.98
648402--648484	21	4.0	21	78	9	89	22	22	22	31	1.99
649191--649428	21	11.4	21	75	13	190	36	21	20	22	1.95
649233--649405	42	4.2	42	93	1	296	35	21	20	21	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
649233--649468	84	2.8	82	86	6	305	35	22	19	22	1.96
649420--649474	21	2.6	21	94	0	92	30	29	20	20	1.97
649212--649474	42	6.3	42	82	8	249	34	22	20	22	1.96
649315--649470	63	2.5	63	80	12	210	35	23	19	21	1.96
651196--651330	57	2.4	58	81	8	152	51	8	10	29	1.65
651457--651537	2	41.5	2	78	14	80	45	2	1	50	1.22
654469--654526	2	29.0	2	100	0	116	50	0	0	50	1.00
655112--655144	16	2.1	16	94	0	57	30	12	18	39	1.87
670249--670362	60	1.9	59	82	5	140	39	16	12	31	1.86
671420--671483	30	2.1	30	97	0	119	25	15	21	37	1.93
683251--683310	26	2.3	27	97	2	113	31	0	6	61	1.22
694951--694994	2	21.5	2	95	4	79	0	47	2	50	1.13
699337--699365	2	15.0	2	92	7	51	51	0	0	48	1.00
702538--702575	2	19.0	2	100	0	76	50	0	0	50	1.00
702871--703142	85	3.2	85	81	5	239	34	24	15	25	1.94
702922--703315	85	4.6	85	78	6	291	33	25	17	23	1.96
704562--704595	18	2.0	17	88	11	52	47	0	5	47	1.26
704562--704600	18	2.1	18	85	4	51	48	0	5	46	1.24
706548--706599	20	2.6	20	96	0	95	38	26	13	21	1.90
706655--706848	20	9.6	20	76	8	76	35	25	19	19	1.95
706651--706848	40	5.0	39	81	4	200	35	26	19	19	1.95
706655--706847	60	3.2	60	83	0	251	35	25	19	19	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
707228--707298	33	2.2	33	92	0	115	11	22	18	47	1.80
707419--707473	14	3.6	14	73	21	56	41	23	25	9	1.83
707419--707486	33	2.1	33	94	0	118	44	25	22	8	1.81
707490--707602	14	6.8	18	66	26	79	9	23	21	45	1.81
707507--707596	14	5.7	14	74	23	81	8	25	23	42	1.83
707490--707604	33	3.5	33	95	0	212	9	24	20	45	1.81
709303--709765	93	5.1	93	92	5	813	22	12	18	46	1.83
709313--709765	177	2.5	179	95	3	804	21	13	18	46	1.83
709809--709937	19	7.3	19	75	17	125	45	28	17	8	1.77
709845--709937	33	2.8	32	91	4	150	46	27	18	7	1.76
709809--709937	52	2.5	52	74	14	140	45	28	17	8	1.77
709933--710067	19	7.6	19	75	16	128	11	18	23	46	1.81
709955--710011	14	3.7	14	75	24	53	10	19	22	47	1.80
709938--710033	33	2.9	33	93	3	167	10	18	21	48	1.78
711971--712006	14	2.6	14	95	0	63	33	0	22	44	1.53
712113--712214	19	5.6	19	84	13	151	44	17	23	14	1.86
712243--712516	19	15.4	19	81	15	354	14	20	17	47	1.83
712221--712488	52	5.0	52	92	4	437	14	21	16	46	1.83
712243--712483	109	2.3	102	85	9	176	14	21	17	46	1.83
714800--714824	12	2.1	12	100	0	50	0	28	0	72	0.86
714999--715045	24	2.0	24	87	8	69	38	21	14	25	1.92
715728--716096	20	18.5	20	85	5	442	20	18	25	34	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
724898--725024	56	2.2	57	82	13	156	32	14	18	34	1.91
731298--731364	35	1.9	35	96	0	125	20	19	28	31	1.97

Tables:   1   2   3

The End!