Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008543.1 Hibiscus syriacus cultivar Beakdansim tig00111432_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  282078

Tables:   1   2   3   

This is table  3  of  3  ( 260 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
261887--262024
60
2.3
60
82
2
170
26
21
22
30
1.98
263646--263682
3
12.3
3
100
0
74
32
0
0
67
0.91
264050--264089
21
2.0
20
90
5
62
57
17
15
10
1.64
265044--265145
30
3.4
30
83
0
123
19
9
6
63
1.47
268484--268536
21
2.5
21
84
0
70
20
26
18
33
1.96
268526--268619
41
2.3
40
87
1
134
38
19
20
22
1.94
268526--268639
61
1.9
60
87
1
165
35
20
20
23
1.95
268526--268637
20
5.6
20
80
4
118
36
20
20
22
1.95
268820--268881
22
2.8
22
87
0
97
25
35
14
24
1.93
269251--269314
20
3.2
20
84
0
74
15
15
23
45
1.84
269266--269320
20
2.8
20
82
0
65
10
14
21
52
1.72
271196--271247
20
2.6
20
87
0
77
40
23
17
19
1.91
271300--271370
20
3.5
20
96
0
115
15
19
22
42
1.89
271858--271899
21
2.2
19
87
12
59
21
35
19
23
1.96
273508--273579
33
2.1
34
89
2
110
45
18
22
13
1.84
273588--273726
20
7.1
19
78
13
111
17
21
21
38
1.93
273633--273726
40
2.3
40
89
3
136
18
21
24
36
1.95
276541--276569
13
2.3
13
94
5
51
37
0
13
48
1.43
276567--276647
31
2.6
32
92
2
128
32
34
2
30
1.71
278976--279010
17
2.1
17
100
0
70
48
5
5
40
1.51

Tables:   1   2   3

The End!