genome.fa.s8543.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008543.1 Hibiscus syriacus cultivar Beakdansim tig00111432_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  282078

Tables:   1   2   3   

This is table  1  of  3  ( 260 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2515--2584	21	3.1	22	64	18	54	32	21	30	15	1.94
3710--4366	113	5.8	114	92	2	1001	29	22	16	31	1.96
3707--4366	225	2.9	224	89	3	1004	29	22	16	31	1.96
6032--6082	22	2.3	22	80	12	52	39	1	5	52	1.37
6123--6177	17	3.1	17	70	10	56	40	7	7	45	1.60
6208--6256	21	2.3	20	83	10	62	40	6	6	46	1.53
8234--8456	111	2.0	111	95	0	347	26	17	12	43	1.84
14862--14996	41	3.5	41	82	13	203	19	20	22	37	1.95
14887--14993	20	5.6	20	68	14	91	16	22	22	38	1.93
14885--14994	34	3.0	34	79	16	139	19	21	21	37	1.95
15760--15813	22	2.5	22	90	0	90	38	25	16	18	1.92
15808--15851	19	2.3	19	96	0	79	45	18	18	18	1.86
15864--15940	20	3.8	20	75	3	91	40	23	20	15	1.91
17810--17853	13	3.3	13	78	6	52	45	9	0	45	1.35
24114--24154	16	2.5	17	80	11	50	60	0	0	39	0.96
24593--25124	265	2.0	256	87	8	756	26	12	20	40	1.88
29732--29778	20	2.3	21	81	3	60	29	12	14	42	1.83
29885--29926	21	2.0	21	90	0	66	26	21	9	42	1.83
29896--29940	21	2.1	21	88	8	65	24	24	8	42	1.83
30680--30771	42	2.2	42	88	3	132	22	20	11	44	1.84
31523--31571	21	2.3	21	85	0	71	46	22	14	16	1.82
31946--32041	48	2.0	48	95	0	174	47	15	13	22	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35243--35267	9	2.8	9	100	0	50	20	0	0	80	0.72
35775--35841	25	2.7	25	82	13	77	38	0	4	56	1.19
35777--35835	18	3.3	18	74	11	50	35	0	3	61	1.13
35775--35841	24	2.7	24	76	17	66	38	0	4	56	1.19
37238--37363	47	2.8	44	84	5	144	30	22	7	38	1.83
37467--37588	40	3.0	40	97	0	226	32	27	17	22	1.96
39962--40119	21	7.8	20	72	7	86	38	25	16	19	1.92
40086--40315	20	11.5	20	81	5	232	36	24	18	19	1.94
40994--41040	24	2.0	24	87	8	69	25	14	21	38	1.92
41215--41239	12	2.1	12	100	0	50	72	0	28	0	0.86
43521--43751	33	6.7	34	80	14	228	46	18	21	13	1.83
43535--43751	19	12.4	19	77	19	240	47	17	21	13	1.83
43535--43751	71	3.1	71	79	12	227	47	17	21	13	1.83
43621--43773	33	4.5	34	72	18	138	45	18	22	13	1.84
43563--43773	52	4.0	52	98	0	395	46	17	22	13	1.83
43798--43862	19	3.4	19	97	2	121	15	21	16	46	1.84
43969--44005	14	2.6	14	91	0	65	45	21	0	32	1.52
45984--46040	14	3.7	14	77	20	60	45	22	21	10	1.82
45965--46057	33	2.8	33	93	0	159	48	21	19	10	1.79
45928--46062	19	7.6	19	75	16	119	46	23	18	11	1.81
46058--46185	19	7.3	19	73	19	116	8	17	28	45	1.78
46058--46148	33	2.8	33	91	5	141	7	18	28	45	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46233--46608	93	4.1	93	98	0	727	46	18	12	22	1.83
48313--48366	14	3.5	14	73	22	54	40	25	25	7	1.82
48302--48383	33	2.5	33	93	0	146	46	21	23	8	1.79
48324--48388	19	3.7	19	74	19	68	43	23	23	10	1.85
48400--48456	14	3.7	14	75	20	60	8	24	22	43	1.81
48384--48464	33	2.5	33	95	0	144	8	22	22	46	1.78
48441--48514	21	3.6	21	83	3	105	10	25	16	47	1.79
48595--48665	33	2.2	33	92	0	115	47	18	22	11	1.80
48847--48901	22	2.5	22	81	0	74	20	16	40	23	1.91
49048--49241	20	9.6	20	82	5	221	19	19	25	35	1.95
49048--49241	60	3.2	60	83	0	253	19	19	25	35	1.95
49228--49310	21	4.0	21	73	6	78	26	15	24	33	1.95
49208--49306	42	2.4	43	77	11	100	22	17	23	37	1.94
49570--49594	2	12.5	2	100	0	50	48	0	0	52	1.00
49815--49873	31	1.9	31	89	0	91	42	3	10	44	1.55
49897--50239	22	15.6	22	87	2	501	48	10	0	41	1.38
50226--50265	12	3.6	12	77	16	50	52	0	2	45	1.14
50605--50797	15	12.5	15	86	8	226	49	0	1	48	1.10
50777--51340	32	18.4	32	68	25	314	34	0	12	53	1.39
50836--50928	22	3.8	22	71	24	78	36	0	11	51	1.39
50800--50977	54	3.3	54	97	0	338	34	0	12	52	1.39
50858--51657	134	5.9	134	73	15	587	33	0	13	52	1.41
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51020--51062	22	2.0	22	100	0	86	34	0	13	51	1.42
50988--51672	54	12.6	54	81	9	829	34	0	12	52	1.40
51074--51116	22	2.0	22	100	0	86	34	0	13	51	1.42
51128--51170	22	2.0	22	100	0	86	34	0	13	51	1.42
51208--51271	26	2.5	26	92	0	110	29	0	15	54	1.41
51265--51318	14	3.6	14	72	18	54	37	0	5	57	1.22
51253--51303	14	3.1	17	70	18	54	33	0	11	54	1.37
51253--51582	18	20.1	17	62	23	86	33	0	13	53	1.40
51287--51603	80	3.9	80	75	14	283	33	0	13	52	1.41
51367--51474	32	3.7	32	76	23	146	34	0	13	51	1.42
51400--51442	22	2.0	22	100	0	86	34	0	13	51	1.42
51511--51564	14	3.6	14	72	18	54	37	0	5	57	1.22
51501--51672	32	6.0	31	75	23	173	36	0	11	52	1.37
51566--51608	22	2.0	22	95	0	77	37	0	11	51	1.39
51620--51662	22	2.0	22	100	0	86	34	0	13	51	1.42
51687--51745	31	1.9	31	89	0	91	44	10	5	40	1.60
53344--53377	17	2.0	17	88	0	50	73	2	0	23	0.97
53985--54195	76	2.8	76	90	5	345	58	12	2	26	1.47
56054--56095	11	3.9	11	87	3	59	80	2	2	14	0.90
56054--56095	22	2.0	22	90	4	68	80	2	2	14	0.90
61783--61816	17	2.0	17	88	0	50	73	2	0	23	0.97
62474--62594	32	3.4	32	66	31	84	58	11	1	28	1.42
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62426--62635	76	2.8	76	91	4	352	58	12	2	26	1.47
62488--62620	44	3.3	43	65	33	105	55	15	1	27	1.49
65020--65059	16	2.4	16	95	4	71	72	0	0	27	0.85
65700--65873	76	2.3	75	85	5	226	58	9	2	29	1.44
67480--67511	16	2.0	16	93	0	55	9	12	12	65	1.47
67715--67753	20	2.0	19	90	5	60	82	5	2	10	0.93
71023--71056	15	2.3	15	94	0	59	5	29	23	41	1.78
72714--72803	33	2.8	33	86	9	134	58	0	1	40	1.05
72704--72797	40	2.4	40	89	5	140	58	0	1	40	1.05
72714--72797	5	17.2	5	86	9	120	58	0	1	40	1.06
72862--72892	15	2.0	16	93	6	55	70	3	0	25	1.02
73479--73666	67	2.6	73	81	11	228	56	12	0	29	1.40
73542--73579	19	2.0	19	89	0	58	47	15	0	36	1.46
73582--73615	13	2.5	13	85	4	50	73	2	2	20	1.09
73479--73701	76	3.1	74	83	9	255	56	11	0	31	1.42
76276--76303	2	14.0	2	100	0	56	50	0	0	50	1.00
76385--76420	14	2.6	14	95	0	63	36	22	13	27	1.92
76989--77153	60	2.8	60	81	10	160	38	5	21	33	1.77
77077--77178	31	3.4	30	72	13	93	41	5	19	33	1.76
77015--77177	60	2.7	60	81	11	174	39	6	20	33	1.78
79402--79451	19	2.6	19	87	9	75	50	20	18	12	1.78
79483--79675	20	9.4	20	82	7	208	36	18	26	18	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
79483--79675	43	4.7	40	80	8	190	36	18	26	18	1.94
79465--79667	63	3.3	62	91	5	315	35	18	27	18	1.95
79362--79677	20	15.6	20	73	11	144	37	19	24	18	1.93
79664--79703	20	2.0	20	95	0	71	55	17	15	12	1.70
79769--79806	6	6.5	6	96	3	69	31	52	15	0	1.43
79769--79818	18	3.1	17	88	11	70	30	52	18	0	1.46
79772--79824	18	3.3	15	82	12	54	30	49	20	0	1.50
80493--80522	6	5.2	6	92	8	53	0	16	50	33	1.46
80493--80522	11	2.6	12	89	10	53	0	16	50	33	1.46
80484--80522	17	2.4	16	91	8	62	0	17	51	30	1.46

Tables:   1   2   3