genome.fa.s8548.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008548.1 Hibiscus syriacus cultivar Beakdansim tig00111440_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1170587

Tables:   1   2   3   4   5   6   7   

This is table  3  of  7  ( 723 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
414580--414628	22	2.2	22	85	3	62	55	12	0	32	1.37
414632--414674	22	2.0	22	100	0	86	51	13	0	34	1.42
414634--414682	22	2.2	22	88	3	71	55	14	0	30	1.40
414637--414787	80	1.9	80	94	0	266	52	13	0	33	1.40
414739--414795	18	3.4	18	69	18	59	54	12	0	33	1.38
414688--414762	22	3.2	23	71	17	73	56	12	0	32	1.36
414752--414858	38	3.0	37	89	8	152	51	12	0	35	1.46
414617--414990	204	1.8	204	96	1	696	53	12	0	34	1.41
414838--414886	22	2.2	22	85	3	62	55	12	0	32	1.37
414938--415096	31	5.4	31	79	18	128	51	6	0	42	1.27
414921--415035	54	2.1	54	95	3	205	53	10	0	35	1.35
414970--415012	22	2.0	22	95	0	77	51	11	0	37	1.39
414972--415020	22	2.2	22	85	3	62	55	12	0	32	1.37
415015--415111	15	6.5	15	91	3	160	52	0	0	47	1.00
414989--415111	31	4.0	30	89	7	176	51	2	0	46	1.14
415015--415111	46	2.2	44	92	3	158	52	0	0	47	1.00
414429--415035	140	4.6	133	82	13	582	53	11	0	34	1.40
416859--416995	68	2.0	68	97	0	256	39	9	19	31	1.84
421827--421879	21	2.5	21	84	0	61	24	18	32	24	1.97
425367--425415	19	2.6	19	90	3	73	46	8	20	24	1.77
425405--425437	10	3.0	11	87	12	50	45	18	18	18	1.86
425405--425438	12	3.0	12	91	8	54	44	20	17	17	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
426060--426140	40	2.0	40	90	0	126	30	28	18	22	1.97
426098--426134	18	2.1	18	94	0	65	29	32	18	18	1.96
440328--440371	19	2.3	19	100	0	88	25	4	9	61	1.45
443515--443605	29	3.1	29	79	3	101	25	9	6	58	1.54
446311--446355	22	2.0	23	91	4	74	20	28	33	17	1.95
448520--448608	23	3.9	23	91	2	135	19	26	29	24	1.98
464655--464727	20	3.6	20	83	1	74	38	30	8	23	1.84
464656--464788	40	3.3	40	76	4	115	36	25	9	28	1.86
464679--464788	20	5.5	19	78	10	94	35	24	9	30	1.87
466214--466305	3	30.7	3	91	0	148	34	1	0	64	1.01
466687--466775	24	3.7	24	75	11	67	71	4	21	2	1.14
467551--467591	20	2.2	18	86	8	55	34	0	4	60	1.18
467641--467685	22	2.2	20	84	8	54	37	2	4	55	1.32
468383--468469	3	28.3	3	78	17	56	26	2	0	71	0.98
468383--468447	31	2.1	32	97	2	123	27	3	0	69	1.03
468383--468469	26	3.0	29	88	8	117	26	2	0	71	0.98
468378--468469	16	5.9	15	76	17	82	26	2	0	71	0.97
470047--470100	14	3.8	14	82	4	63	24	14	9	51	1.71
472505--472863	180	2.0	179	99	0	709	35	22	12	28	1.91
475697--475926	83	2.8	83	95	1	408	26	13	22	36	1.92
475875--476635	52	14.8	52	97	1	1403	24	14	23	37	1.92
475875--476635	259	3.0	259	97	1	1433	24	14	23	37	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
477100--477644	113	4.7	113	89	2	761	37	13	20	28	1.90
477895--477980	3	29.0	3	88	2	129	34	1	0	63	1.02
478354--478443	24	3.7	24	72	15	69	72	4	21	2	1.13
479221--479261	20	2.2	18	86	8	55	34	0	4	60	1.18
479311--479355	22	2.2	20	84	8	54	37	2	4	55	1.32
484744--484776	16	2.1	16	100	0	66	57	24	12	6	1.57
484840--484903	10	6.6	10	75	20	64	57	20	10	10	1.62
484844--484888	22	2.0	22	91	0	72	55	22	13	8	1.65
484840--484905	16	4.1	16	78	5	71	57	19	10	12	1.63
486592--486821	64	3.6	64	79	9	204	33	19	18	29	1.95
487537--487857	103	3.1	103	97	0	606	26	13	23	36	1.92
487873--487941	23	3.0	23	80	0	75	23	21	24	30	1.99
491989--492209	64	3.5	64	82	7	245	34	19	18	27	1.95
492925--493245	103	3.1	103	96	0	570	25	14	22	37	1.92
493272--493327	23	2.4	23	87	0	76	23	19	23	33	1.97
493285--493329	23	2.0	23	95	0	81	22	15	26	35	1.94
494412--494482	10	6.3	10	72	23	52	56	25	11	7	1.59
494418--494483	14	5.3	14	70	26	67	54	25	13	6	1.62
494412--494483	24	3.0	24	95	0	135	55	25	12	6	1.61
494494--494585	40	2.2	40	83	9	114	36	15	13	34	1.86
497100--497136	2	18.5	2	100	0	74	48	0	0	51	1.00
500964--501118	64	2.4	63	91	4	242	30	18	22	28	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
501324--501709	193	2.0	194	93	2	670	37	14	6	41	1.72
502551--502578	11	2.5	11	100	0	56	50	7	7	35	1.57
506614--506653	21	1.9	21	89	0	62	30	7	7	55	1.56
508589--508743	64	2.4	64	89	4	224	31	16	22	29	1.96
508752--508806	20	2.8	20	94	0	101	29	21	23	25	1.99
520579--521327	54	13.9	54	89	0	1041	34	20	24	21	1.97
521525--521571	2	23.5	2	100	0	94	48	0	0	51	1.00
521702--521742	8	5.1	8	87	0	64	36	0	12	51	1.40
521691--521738	22	2.2	22	92	0	78	37	0	12	50	1.41
521692--521748	26	2.2	26	93	0	96	33	0	15	50	1.44
525143--525296	65	2.4	64	83	3	184	30	16	21	31	1.96
527913--527966	20	2.7	20	100	0	108	25	14	25	33	1.95
540182--540238	23	2.5	23	100	0	114	36	22	8	31	1.85
540266--540327	30	2.0	31	81	9	74	53	3	3	40	1.33
540850--540886	2	18.5	2	100	0	74	51	0	0	48	1.00
550975--551022	19	2.5	20	82	6	62	58	0	2	39	1.10
551104--551176	3	24.7	3	97	2	139	34	0	0	65	0.93
563251--563298	19	2.6	18	83	3	60	39	20	18	20	1.92
564494--564596	50	2.1	50	81	7	120	32	11	4	51	1.59
564612--564650	10	4.3	10	75	24	50	38	0	7	53	1.30
566040--566081	2	21.0	2	100	0	84	50	0	0	50	1.00
571095--571137	2	21.5	2	100	0	86	48	0	51	0	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
571724--571753	2	15.0	2	100	0	60	50	0	0	50	1.00
574267--574310	21	2.0	23	82	8	56	52	0	9	38	1.33
574402--574482	11	7.6	11	75	8	87	18	7	4	69	1.31
574398--574511	21	5.4	21	94	0	192	18	10	6	64	1.44
574636--574763	31	4.2	31	73	6	100	44	11	7	36	1.68
574714--574788	30	2.5	31	85	10	93	41	9	6	42	1.63
574964--575001	2	19.0	2	100	0	76	50	0	0	50	1.00
577936--577969	3	11.3	3	93	0	59	61	0	0	38	0.96
577968--578006	3	13.0	3	100	0	78	33	0	0	66	0.92
578317--578678	180	2.0	181	99	0	717	38	14	18	28	1.91
580235--580276	21	2.0	21	95	0	75	26	28	21	23	1.99
580438--580492	20	2.8	20	86	8	78	16	27	36	20	1.93
580389--580471	33	2.5	33	84	5	105	20	21	36	21	1.96
581224--581294	35	2.0	36	97	2	135	33	11	8	46	1.70
583848--583889	21	2.0	21	95	0	75	26	28	21	23	1.99
584001--584085	34	2.5	34	94	1	143	18	27	34	20	1.96
584029--584087	20	3.2	20	67	28	58	13	33	32	20	1.91
589779--589841	26	2.5	25	75	12	67	65	1	0	33	1.03
591425--591473	19	2.4	21	76	16	57	36	10	10	42	1.73
592226--592276	19	2.6	20	81	6	59	27	0	0	72	0.85
592240--592272	12	2.6	13	85	9	50	21	0	0	78	0.75
592248--592272	6	4.2	6	100	0	50	16	0	0	84	0.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
592225--592276	14	3.9	14	78	14	56	26	0	0	73	0.84
592680--592787	33	3.2	33	66	21	87	46	5	6	41	1.53
592652--592789	69	2.0	69	94	0	240	46	7	5	40	1.55
593449--593498	2	25.0	2	100	0	100	50	0	0	50	1.00
594060--594086	3	9.0	3	100	0	54	33	0	0	66	0.92
596776--596811	2	18.0	2	100	0	72	50	0	0	50	1.00
596990--597055	26	2.5	26	78	4	71	53	0	0	46	1.00
607427--607873	228	2.0	226	93	1	770	45	8	7	39	1.61
607936--607980	20	2.3	20	85	14	67	55	11	15	17	1.68
608107--608152	20	2.5	17	78	18	56	54	8	15	21	1.68

Tables:   1   2   3   4   5   6   7