genome.fa.s8550.2.7.7.80.10.50.1000.4.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008550.1 Hibiscus syriacus cultivar Beakdansim tig00111445_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1154708

Tables:   1   2   3   4   5   6   

This is table  4  of  6  ( 681 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
556924--557188	102	2.6	101	91	1	404	29	17	13	38	1.88
556568--557130	269	2.2	257	89	5	844	28	17	13	41	1.86
556974--557059	37	2.4	37	82	2	93	27	19	13	38	1.90
556741--557124	167	2.3	158	78	12	378	29	17	13	39	1.87
557075--557157	36	2.3	36	89	0	121	24	19	14	42	1.88
557254--557322	36	1.9	36	93	0	120	23	21	13	42	1.88
557340--557425	34	2.4	36	86	7	131	41	16	8	33	1.78
557326--557424	34	2.8	34	83	7	119	42	15	8	34	1.76
559830--559945	21	5.6	21	67	10	60	34	24	19	21	1.96
559933--560144	20	10.6	20	73	9	128	38	24	17	19	1.93
559933--560143	40	5.2	40	80	4	201	38	24	17	19	1.92
560709--560805	20	4.8	20	82	9	126	51	19	17	11	1.75
560709--560816	19	5.5	19	83	5	117	50	21	16	11	1.75
560859--560905	20	2.3	21	85	10	71	10	25	14	48	1.76
562581--562960	94	4.1	94	92	1	611	22	11	18	47	1.80
563025--563146	19	6.9	18	71	21	71	45	22	19	11	1.82
563048--563141	33	2.8	33	91	0	143	44	25	20	9	1.81
563080--563147	19	3.8	19	77	18	74	47	26	17	8	1.77
563153--563246	19	5.5	19	68	23	82	10	22	20	46	1.81
563177--563234	14	3.8	14	71	20	53	10	22	18	48	1.78
563163--563246	33	2.5	33	94	0	141	11	22	17	47	1.80
563726--563791	21	3.2	21	69	2	62	25	36	18	19	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
563674--563791	42	2.8	42	82	6	116	23	35	16	23	1.95
565140--565175	14	2.6	14	95	0	63	33	0	22	44	1.53
565282--565340	19	3.4	19	71	22	65	45	18	20	15	1.85
565282--565361	33	2.4	33	91	0	124	46	21	20	12	1.83
565371--565517	33	4.3	33	82	10	177	12	21	19	46	1.83
565406--565504	19	5.4	19	73	13	100	13	21	19	46	1.83
569018--569243	20	11.2	20	86	6	244	20	17	22	38	1.93
569014--569303	60	4.8	60	80	9	268	21	17	22	38	1.93
569010--569283	40	6.8	41	85	3	204	20	17	23	38	1.93
569353--569406	20	2.7	19	75	8	63	16	18	31	33	1.93
570410--570609	36	5.4	36	80	9	222	41	10	20	28	1.84
570466--570607	21	7.3	21	71	20	121	42	9	19	28	1.82
570429--570607	57	3.1	56	71	19	163	42	9	19	28	1.82
570427--570638	36	5.7	36	77	9	176	42	9	18	29	1.82
570690--570894	86	2.4	84	84	7	254	34	12	23	29	1.92
570887--571073	60	3.1	60	92	2	306	24	13	28	33	1.93
570990--571262	144	1.9	144	90	0	438	28	16	26	28	1.97
571407--571604	54	3.9	53	78	9	214	40	21	9	29	1.84
571456--571595	46	2.9	49	82	9	171	39	22	11	27	1.88
571609--571806	55	3.6	55	82	0	225	41	12	8	36	1.74
573049--573111	28	2.2	28	88	0	90	20	3	34	41	1.68
582244--582705	149	3.1	149	96	1	840	34	20	16	28	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
584064--584222	63	2.5	63	86	0	201	27	21	19	31	1.97
584190--584227	19	2.0	20	94	5	69	26	28	15	28	1.96
587340--587801	149	3.1	149	96	0	847	34	20	15	28	1.94
589157--589315	63	2.5	63	87	0	210	27	22	19	31	1.98
589283--589320	19	2.0	20	94	5	69	26	28	15	28	1.96
604608--604697	39	2.2	41	84	7	112	30	16	6	46	1.73
604631--604719	43	2.1	42	85	2	115	30	16	5	47	1.70
608153--608192	2	20.5	2	84	5	55	47	2	2	47	1.29
609905--609939	12	2.9	12	82	0	52	54	0	34	11	1.37
613084--613172	31	2.9	31	94	0	151	23	15	20	40	1.91
619863--619905	19	2.3	19	83	0	59	32	2	4	60	1.30
622319--622477	79	2.0	79	97	0	300	35	20	12	31	1.90
626733--626865	69	1.9	69	98	0	257	36	18	15	28	1.92
629310--629585	153	1.8	153	86	1	401	36	14	22	25	1.93
631537--631630	35	2.7	36	83	6	122	40	25	1	32	1.63
637959--637988	15	2.0	15	93	0	51	36	16	6	40	1.75
638390--638468	23	3.5	22	77	6	88	27	22	20	29	1.98
638963--638987	13	1.9	13	100	0	50	32	8	4	56	1.47
642009--642275	149	1.8	147	90	1	435	48	9	4	37	1.56
642394--642461	35	1.9	35	96	0	127	35	1	22	41	1.63
642710--642769	29	2.1	29	100	0	120	46	15	16	21	1.83
644265--644378	59	1.9	61	80	10	137	47	13	9	29	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
644791--644909	60	2.0	60	84	0	157	28	20	17	33	1.95
652589--652864	153	1.8	153	87	1	419	36	15	22	24	1.93
658603--658715	59	1.9	58	84	7	149	29	21	16	32	1.95
661610--661654	23	2.0	23	100	0	90	26	20	31	22	1.98
663459--663527	34	2.0	35	94	2	122	15	27	34	21	1.94
663721--663760	20	2.0	20	90	4	64	55	7	0	37	1.29
667235--667274	20	2.0	20	90	4	64	55	7	0	37	1.29
671788--671827	20	2.0	20	95	0	71	22	10	37	30	1.87
672283--673062	115	6.7	116	85	7	955	26	20	13	39	1.90
672745--673081	114	3.0	114	85	3	482	28	20	14	36	1.92
674222--674259	18	2.1	18	95	0	67	55	5	7	31	1.51
681918--681966	15	3.3	15	86	13	66	53	4	16	26	1.61
684748--684774	4	6.8	4	100	0	54	77	0	0	22	0.76
685254--685338	28	3.0	27	79	6	80	60	0	8	31	1.26
685233--685289	24	2.5	23	77	8	62	64	1	5	28	1.25
685800--686033	127	1.8	126	80	8	278	46	6	6	39	1.57
687652--687702	3	17.3	3	83	4	50	58	0	0	41	0.98
687643--687685	18	2.4	19	84	11	63	58	0	0	41	0.98
687660--687702	15	2.9	15	89	0	59	55	0	0	44	0.99
687656--687702	21	2.2	21	96	0	85	57	0	0	42	0.98
701736--701783	19	2.5	20	82	3	62	52	6	12	29	1.63
712476--712549	2	37.0	2	100	0	148	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
714578--714615	20	1.9	20	100	0	76	36	10	28	23	1.88
715897--715938	12	3.6	12	87	6	68	9	14	47	28	1.75
715936--716026	2	48.0	2	72	10	66	47	0	0	52	1.00
717411--717451	2	20.5	2	100	0	82	48	0	0	51	1.00
722883--722909	7	3.9	7	100	0	54	70	0	29	0	0.88
728928--728999	11	6.4	11	73	20	60	80	0	13	5	0.88
728923--728999	19	4.1	18	82	12	77	79	0	14	6	0.92
728961--729011	11	4.8	11	79	16	63	76	0	15	7	1.00
730256--731185	53	17.6	53	90	1	1346	34	19	25	21	1.96
731418--731452	2	17.5	2	100	0	70	51	0	0	48	1.00
733979--734046	19	3.4	19	78	13	75	39	5	1	52	1.34
737392--737436	19	2.3	19	88	7	63	77	0	4	17	0.92
738733--738886	39	3.9	38	85	8	193	43	5	2	48	1.39
738845--738961	28	4.2	28	89	4	168	45	3	2	48	1.32
741434--741514	24	3.4	23	77	6	72	44	18	9	27	1.81
741448--741561	24	4.8	24	82	5	142	38	20	13	28	1.90
746122--746157	2	18.0	2	100	0	72	50	0	0	50	1.00
746704--746747	2	22.0	2	100	0	88	50	0	0	50	1.00
747752--747806	24	2.3	24	81	6	58	47	3	3	45	1.38
747954--748017	31	2.1	31	85	5	85	40	20	17	21	1.91
751530--751605	29	2.5	32	85	12	122	50	5	9	35	1.57
755809--755841	16	2.0	17	88	5	50	9	18	9	63	1.49
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
759580--759696	60	2.0	60	91	0	189	31	12	17	37	1.88
778702--778753	20	2.4	22	81	12	63	65	1	0	32	1.04
779441--779789	111	3.1	110	90	2	538	44	13	15	26	1.83
779661--780298	182	3.5	182	91	1	994	43	12	15	27	1.84
780936--780983	23	2.1	23	88	0	69	39	16	8	35	1.79
781396--781466	17	4.2	17	68	18	58	33	1	5	59	1.30
781782--781820	19	2.1	19	90	0	60	20	0	25	53	1.45
786295--786418	64	2.0	63	88	4	187	33	5	26	33	1.80
788272--788310	19	2.1	19	85	0	51	43	15	23	17	1.87
789471--789515	20	2.2	20	88	0	63	46	2	0	51	1.13

Tables:   1   2   3   4   5   6