genome.fa.s8550.2.7.7.80.10.50.1000.6.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008550.1 Hibiscus syriacus cultivar Beakdansim tig00111445_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1154708

Tables:   1   2   3   4   5   6   

This is table  6  of  6  ( 681 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1022328--1022367	15	2.7	15	92	0	62	42	12	12	32	1.80
1024789--1024818	15	2.1	14	93	6	51	30	0	0	70	0.88
1026375--1026418	22	2.0	22	81	0	52	50	0	0	50	1.00
1037592--1037668	20	3.9	19	81	9	84	80	1	16	1	0.85
1037592--1037668	10	8.0	9	77	17	75	80	1	16	1	0.85
1038023--1038071	19	2.8	17	81	9	55	36	10	6	46	1.63
1038365--1038701	114	3.0	114	94	0	566	35	14	18	31	1.91
1039654--1040090	116	3.8	110	83	9	432	38	14	18	27	1.91
1039888--1040178	124	2.4	122	88	5	405	42	15	19	22	1.89
1040319--1040368	3	17.0	3	76	12	50	34	0	0	66	0.92
1040314--1040356	15	3.1	14	87	9	61	27	0	0	72	0.85
1040317--1040368	26	2.0	26	88	0	77	32	0	0	67	0.91
1041725--1041800	29	2.7	27	73	13	64	27	1	3	67	1.17
1048321--1048413	2	46.5	2	100	0	186	49	0	0	50	1.00
1059444--1059519	33	2.3	33	95	2	134	43	23	17	15	1.87
1062816--1062910	47	2.0	47	97	0	181	42	20	18	18	1.90
1063038--1063157	60	2.0	61	98	1	233	30	15	11	42	1.82
1071689--1071755	32	2.1	33	91	8	111	62	11	5	19	1.49
1074288--1074353	33	2.0	33	93	0	114	34	25	13	25	1.93
1082673--1082825	76	2.0	76	89	2	236	37	7	39	15	1.76
1082909--1082953	15	2.9	16	87	12	67	44	4	0	51	1.21
1082972--1083031	31	1.9	31	83	6	77	53	3	3	40	1.34
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1083007--1083065	21	2.7	22	74	10	59	49	5	1	44	1.34
1083007--1083065	22	2.7	21	78	5	55	49	5	1	44	1.34
1083136--1083263	61	2.1	63	82	5	154	42	7	7	42	1.63
1083401--1083552	82	1.9	82	83	9	204	43	5	2	48	1.41
1083590--1083679	20	4.6	20	72	12	78	51	3	6	38	1.45
1083591--1083686	27	3.7	27	77	6	99	50	3	6	40	1.43
1083652--1083686	18	1.9	18	88	0	52	45	2	5	45	1.41
1083926--1083984	22	2.5	24	78	13	68	49	6	1	42	1.39
1084116--1084295	2	88.0	2	73	14	145	46	2	3	47	1.33
1084100--1084161	9	6.4	9	75	14	61	38	3	8	50	1.48
1084392--1085104	216	3.3	214	89	4	1091	30	10	7	51	1.64
1085457--1085551	21	4.5	21	88	2	138	25	31	17	25	1.97
1085457--1085551	42	2.3	42	92	0	154	25	31	17	25	1.97
1088448--1089832	4	359.2	4	89	8	2200	48	26	0	24	1.53
1090524--1091027	162	3.0	161	85	7	611	41	15	15	27	1.87
1090684--1091092	176	2.3	179	86	3	547	41	16	15	27	1.88
1091867--1091932	6	11.0	6	86	0	96	33	46	18	1	1.58
1091867--1091939	24	3.0	24	89	0	110	32	45	20	1	1.60
1091900--1091939	12	3.3	12	85	0	62	30	42	27	0	1.56
1091946--1092058	3	34.7	3	74	15	75	14	30	54	0	1.40
1091981--1092052	17	4.5	17	77	19	91	16	30	52	0	1.44
1091955--1092052	47	2.2	43	92	7	160	16	30	53	0	1.43
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1093921--1094329	212	2.0	205	95	4	730	30	11	26	31	1.92
1094595--1094637	21	2.0	21	86	0	59	44	9	27	18	1.80
1096425--1096473	19	2.6	19	93	0	80	30	2	12	55	1.48
1096827--1096868	15	2.8	15	96	0	75	61	14	7	16	1.53
1096842--1097970	198	5.7	199	84	4	1383	38	13	15	31	1.86
1099471--1099514	15	2.9	15	82	0	61	34	0	18	47	1.49
1100819--1100871	24	2.2	24	82	0	61	33	3	15	47	1.63
1101298--1102193	200	4.5	199	87	2	1165	39	12	15	32	1.86
1106309--1107021	199	3.6	197	82	6	805	40	14	14	30	1.86
1107022--1107069	23	2.1	23	88	0	69	39	16	8	35	1.79
1107106--1107150	23	2.0	23	86	0	63	40	17	6	35	1.76
1107193--1107237	23	2.0	23	90	0	72	37	17	8	35	1.81
1107022--1107260	87	2.7	87	96	0	433	33	13	10	42	1.78
1111582--1111632	22	2.3	22	100	0	102	31	15	13	39	1.87
1118862--1118922	8	7.6	8	72	7	52	42	13	19	24	1.87
1118858--1118924	24	2.8	25	88	8	95	40	17	17	23	1.91
1125058--1125097	16	2.4	17	83	4	55	47	2	5	45	1.38
1125185--1125222	20	1.9	20	88	0	58	42	0	2	55	1.14
1125248--1125279	2	16.0	2	100	0	64	50	0	0	50	1.00
1125580--1125622	14	2.9	15	79	6	52	39	0	2	58	1.11
1127359--1127412	20	2.7	20	82	0	63	35	29	11	24	1.90
1128091--1128127	13	3.0	13	80	11	51	45	0	43	10	1.39
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1130002--1130057	26	2.1	26	83	9	69	28	1	3	66	1.19
1130019--1130062	15	2.9	15	80	16	54	27	2	0	70	0.99
1130024--1130075	18	2.7	19	82	11	61	25	5	0	69	1.10
1130084--1130129	14	3.1	15	78	15	51	13	10	0	76	1.03
1135128--1135172	21	2.1	21	87	0	63	31	28	24	15	1.96
1135975--1136068	31	3.0	31	89	3	136	20	20	23	36	1.95
1137555--1137590	11	3.6	10	88	11	56	13	22	30	33	1.93
1137582--1137636	23	2.5	22	84	3	65	20	43	23	12	1.86
1137594--1137645	13	4.3	13	76	18	67	19	46	23	11	1.82
1137593--1137639	22	2.1	23	92	4	78	19	48	23	8	1.75
1144786--1144833	10	4.8	10	80	10	62	16	18	27	37	1.92
1144843--1144884	17	2.4	18	96	4	77	16	50	23	9	1.75
1144844--1144890	13	3.3	13	78	21	58	17	46	23	12	1.82
1144921--1144987	29	2.3	29	84	0	89	29	5	23	40	1.79
1154648--1154695	21	2.2	21	82	10	53	29	2	2	66	1.14

Tables:   1   2   3   4   5   6

The End!