genome.fa.s8559.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008559.1 Hibiscus syriacus cultivar Beakdansim tig00111466_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  490547

Tables:   1   2   3   

This is table  3  of  3  ( 306 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
402693--402738	20	2.3	20	96	0	83	26	36	8	28	1.86
406614--406673	18	3.4	18	78	13	72	0	18	0	81	0.69
406629--406673	11	4.1	11	91	5	65	0	15	0	84	0.62
412480--412523	18	2.4	18	85	10	63	68	0	4	27	1.09
412550--412593	18	2.4	19	88	3	63	70	0	6	22	1.11
413191--413376	76	2.5	75	88	6	265	56	13	0	30	1.38
413258--413368	19	5.8	19	71	16	61	56	14	0	28	1.38
413270--413376	24	4.3	24	65	17	74	58	13	0	28	1.35
413270--413317	25	2.0	24	83	4	60	60	14	0	25	1.34
413297--413358	32	1.9	32	84	12	83	62	11	0	25	1.28
413193--413401	76	2.8	73	80	7	226	56	12	0	29	1.42
415102--415207	5	20.8	5	67	11	54	69	3	6	19	1.26
415158--415213	21	2.7	20	86	5	76	76	3	5	14	1.09
420073--420160	19	4.5	19	65	19	56	53	14	0	31	1.42
425524--425562	18	2.2	18	90	0	60	51	30	12	5	1.62
431979--432026	23	2.1	23	84	0	60	35	10	18	35	1.85
432373--432438	25	2.6	25	80	0	87	42	13	9	34	1.76
434905--435396	183	2.7	182	96	0	887	32	18	15	34	1.91
435787--435844	23	2.5	23	94	0	98	37	20	5	36	1.75
436341--436403	24	2.7	24	97	2	119	46	12	14	26	1.80
436396--436878	198	2.4	199	97	1	905	29	17	15	37	1.90
436997--437045	19	2.6	19	93	0	80	57	10	2	30	1.43
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
438839--438899	32	1.9	32	86	0	86	22	45	0	31	1.53
438933--438976	21	2.1	21	91	0	70	15	31	11	40	1.83
441187--441229	20	2.3	18	85	14	61	20	16	11	51	1.75
441159--441628	181	2.6	182	87	2	628	27	15	14	42	1.86
441555--441599	19	2.4	19	80	0	54	17	22	13	46	1.83
442569--442594	13	2.0	13	100	0	52	46	7	0	46	1.31
443183--443227	15	2.9	15	83	6	63	75	2	6	15	1.11
443183--443225	16	2.8	15	89	3	59	76	2	4	16	1.05
443285--443340	6	9.3	6	74	14	53	76	1	5	16	1.05
443285--443340	24	2.3	24	84	6	78	76	1	5	16	1.05
443342--443407	30	2.2	31	86	2	89	72	1	10	15	1.18
443580--443638	15	4.0	15	72	10	50	62	3	3	30	1.28
446509--446593	3	29.7	3	76	9	70	55	1	2	41	1.20
446511--446593	23	3.7	23	77	6	71	55	1	2	40	1.21
446546--446593	11	4.5	11	79	10	64	60	0	2	37	1.09
446520--446600	14	5.9	14	80	13	80	54	0	2	43	1.13
446851--447403	52	10.6	52	94	0	935	29	25	16	28	1.97
447399--447786	55	7.1	55	87	3	588	28	28	14	29	1.95
447396--447786	109	3.6	108	91	2	631	28	27	14	29	1.95
449068--449159	10	9.1	10	71	14	64	6	9	1	82	0.88
449062--449154	8	11.0	8	76	15	55	6	9	1	82	0.88
449070--449140	18	3.9	16	72	25	52	5	9	1	83	0.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
457398--457482	3	29.7	3	76	9	70	55	1	2	41	1.20
457400--457482	23	3.7	23	77	6	71	55	1	2	40	1.21
457435--457482	11	4.5	11	79	10	64	60	0	2	37	1.09
457409--457489	14	5.9	14	80	13	80	54	0	2	43	1.13
462844--462889	4	11.2	4	82	13	58	52	21	2	23	1.58
463354--463575	103	2.2	99	81	9	254	28	18	13	39	1.88
463523--463639	34	3.4	33	77	9	108	29	20	13	35	1.91
463544--463640	36	2.8	33	78	9	104	34	19	13	32	1.91
463886--463985	28	3.7	26	82	10	112	29	10	15	46	1.78
464081--464155	28	2.6	28	89	6	107	28	6	18	46	1.74
464342--464459	63	1.9	62	86	8	168	27	18	11	41	1.86
464537--465149	128	4.8	128	92	2	953	23	31	19	25	1.98
464537--465149	257	2.4	258	92	1	1052	23	31	19	25	1.98
465334--465394	3	21.0	3	77	12	65	27	3	1	67	1.16
465327--465389	29	2.2	30	88	8	103	25	4	3	66	1.26
465340--465405	28	2.3	28	82	7	71	27	4	1	66	1.20
469377--469420	22	1.9	23	81	9	54	56	6	9	27	1.55
472789--472831	19	2.1	19	83	12	50	13	34	2	48	1.56
475284--475810	144	3.7	141	83	4	616	30	25	23	20	1.99
475282--475810	281	1.9	283	83	3	690	30	24	23	20	1.99
479097--479141	15	3.1	15	77	6	56	42	0	0	57	0.98
480044--480077	2	17.0	2	93	0	59	47	0	2	50	1.16

Tables:   1   2   3

The End!