genome.fa.s8570.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008570.1 Hibiscus syriacus cultivar Beakdansim tig00111495_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  912507

Tables:   1   2   3   4   5   

This is table  1  of  5  ( 580 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
397--441	18	2.5	18	85	0	63	24	46	15	13	1.82
903--969	20	3.4	20	81	2	73	38	23	22	14	1.92
958--1015	14	3.9	14	79	16	71	48	24	17	10	1.78
942--1031	32	2.8	32	96	1	162	46	22	18	12	1.82
1048--1105	14	3.9	14	79	16	71	10	17	24	48	1.78
1043--1121	32	2.4	33	95	2	142	11	18	22	46	1.81
1064--1163	19	5.5	19	77	12	77	14	21	22	43	1.87
1106--1160	20	2.8	19	89	5	83	16	25	23	34	1.95
3154--3240	14	5.5	14	68	24	57	47	18	20	13	1.83
3135--3241	33	3.2	33	87	0	151	43	19	21	14	1.87
3164--3223	19	3.4	19	78	21	85	46	16	21	15	1.83
3264--3321	20	2.9	20	92	0	89	18	22	20	37	1.94
4379--4432	24	2.2	24	90	0	81	24	16	20	38	1.92
4607--4631	12	2.1	12	100	0	50	72	0	28	0	0.86
6918--7040	33	3.7	33	83	4	176	43	17	22	16	1.88
6918--7047	66	2.0	66	95	0	233	42	17	22	17	1.89
7040--7082	20	2.2	20	87	4	61	16	18	23	41	1.89
7068--7101	14	2.4	14	85	0	50	8	23	20	47	1.78
7223--7273	14	3.6	14	94	0	84	43	25	0	31	1.55
8631--8697	21	3.2	21	68	4	55	19	20	35	23	1.95
8631--8753	42	2.9	41	80	7	113	22	17	36	22	1.95
10751--10910	19	8.8	19	72	15	106	44	21	21	11	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10776--10861	33	2.6	33	92	1	136	38	25	24	11	1.89
10846--10915	19	3.7	19	96	0	122	47	21	20	11	1.81
10779--10910	33	3.8	33	84	6	129	43	24	21	11	1.85
10911--10995	37	2.2	39	89	4	129	10	16	24	48	1.78
10911--10995	19	4.5	18	86	8	116	10	16	24	48	1.78
11547--11647	20	4.9	21	71	12	59	18	19	18	42	1.89
11510--11603	20	4.7	20	80	2	89	23	18	24	34	1.96
11531--11665	41	3.3	41	82	4	139	19	21	20	38	1.94
11592--11705	21	5.5	21	83	3	133	16	25	18	39	1.91
11592--11705	41	2.8	41	86	2	131	16	25	18	39	1.91
12162--12233	31	2.3	31	78	0	81	29	13	9	47	1.75
12685--12880	86	2.3	87	94	0	340	42	11	8	37	1.72
15627--15665	21	1.9	20	84	5	51	41	17	12	28	1.87
15757--15802	16	2.9	16	96	0	83	41	10	6	41	1.66
25121--25187	32	2.1	32	91	0	107	50	4	7	37	1.51
26866--26934	23	3.0	23	89	0	102	26	26	27	20	1.99
27142--27212	30	2.4	30	90	0	106	33	21	5	39	1.77
51647--51684	3	12.7	3	88	0	58	0	60	0	39	0.97
51777--51819	6	7.2	6	83	0	59	23	0	44	32	1.54
53768--53799	2	16.0	2	100	0	64	50	0	0	50	1.00
54705--54755	17	3.1	17	78	18	54	43	0	0	56	0.99
54856--54901	23	2.0	23	83	8	58	34	0	2	63	1.07
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54844--54912	30	2.3	31	78	9	72	39	0	1	59	1.06
55135--55202	20	3.2	21	76	14	61	35	16	20	27	1.94
63099--63170	33	2.1	34	84	2	92	23	26	15	34	1.94
63617--63654	20	1.9	20	88	0	58	23	21	36	18	1.95
63898--63959	18	3.2	19	88	11	90	51	11	12	24	1.72
66964--67004	21	1.9	22	90	5	66	21	21	26	29	1.99
67123--67191	36	1.9	35	82	2	84	21	17	31	28	1.96
68632--68659	2	14.0	2	100	0	56	50	0	0	50	1.00
68868--68919	21	2.5	21	81	3	61	38	19	25	17	1.93
68908--69002	20	4.7	20	78	7	75	32	25	17	24	1.97
69190--69233	22	2.0	22	90	0	70	20	43	15	20	1.88
69496--69554	20	3.0	20	87	0	73	16	18	22	42	1.89
69691--69745	25	2.2	24	78	15	58	20	9	18	52	1.71
70597--70723	33	3.8	33	84	4	184	43	18	22	15	1.88
70598--70730	66	2.0	66	94	0	230	42	18	21	17	1.90
70723--70817	38	2.7	35	82	10	113	14	21	20	44	1.87
70754--70817	19	3.4	19	97	0	119	14	20	18	46	1.83
70924--70960	14	2.6	14	91	0	65	45	24	0	29	1.53
72286--72404	42	2.8	40	80	7	103	25	16	33	24	1.96
72626--72810	91	2.0	90	90	6	291	46	18	12	22	1.82
74497--74575	20	4.0	20	86	4	106	44	17	24	13	1.85
74540--74638	33	3.0	33	89	1	153	40	23	25	11	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
74610--74698	19	4.7	19	95	0	160	47	21	20	11	1.81
74694--74738	19	2.4	19	80	0	54	8	20	24	46	1.78
75292--75344	20	2.7	20	93	0	88	26	20	28	24	1.99
75353--75406	20	2.7	20	91	0	81	29	18	20	31	1.96
75293--75409	61	1.9	61	83	0	153	25	17	22	34	1.96
75293--75427	61	2.2	61	80	2	146	24	20	22	33	1.97
76592--76681	47	1.9	47	88	2	137	31	17	10	41	1.83
76690--76743	21	2.6	21	74	11	56	44	7	12	35	1.71
77909--77946	20	1.9	20	84	10	51	42	2	0	55	1.14
81664--82081	51	7.9	51	77	12	373	29	23	15	31	1.95
81660--82071	162	2.6	162	84	6	529	29	23	16	31	1.96
82086--82157	37	2.0	36	94	2	126	20	22	20	36	1.96
83430--83591	16	10.7	15	68	20	81	9	16	0	74	1.11
83448--83484	19	1.9	19	94	0	65	10	21	0	67	1.21
83441--83484	19	2.4	19	85	7	56	9	18	0	72	1.10
83435--83585	40	3.7	40	73	15	114	8	17	0	73	1.12
83508--83560	14	3.6	14	80	17	54	5	18	0	75	0.99
83447--83560	57	1.9	61	84	10	157	7	19	0	72	1.12
83511--83591	30	2.7	29	84	5	90	9	13	0	76	1.02
93225--93335	45	2.3	47	84	7	145	39	21	9	28	1.85
101004--101030	13	2.1	13	100	0	54	37	14	25	22	1.93
114684--114802	41	2.9	42	93	3	197	16	21	19	42	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
121784--121902	41	2.9	41	89	0	184	38	23	15	21	1.92
121838--121982	20	7.2	20	85	4	157	31	26	17	24	1.97
125250--125304	19	2.8	19	83	2	65	40	21	20	18	1.92
125277--125370	33	2.8	33	95	0	161	45	19	23	11	1.83
125257--125335	19	4.4	19	75	16	78	44	20	21	13	1.86
125370--125444	19	4.2	19	77	16	63	12	17	25	45	1.82
125400--125469	19	4.0	18	78	16	85	10	20	21	48	1.78
125380--125486	52	2.1	52	87	0	151	11	18	21	48	1.79
125585--125621	14	2.6	14	91	0	65	45	21	0	32	1.52
127481--127882	94	4.3	94	97	0	718	47	18	12	21	1.82
127481--127882	187	2.1	187	95	1	716	47	18	12	21	1.82
129568--129647	20	4.1	19	90	6	124	47	17	23	11	1.80
129643--129735	33	2.8	33	90	1	132	10	21	24	43	1.84
129673--129741	20	3.8	19	70	20	67	11	23	21	43	1.85
130287--130503	20	10.6	20	71	10	136	23	19	19	37	1.94
130287--130503	41	5.3	40	72	11	127	23	19	19	37	1.94
130493--130574	21	4.0	20	76	12	85	34	15	25	24	1.95
131816--131972	79	2.0	79	84	2	208	35	12	10	40	1.78
138210--138338	47	2.7	47	82	0	150	31	29	21	17	1.96
141197--141238	18	2.3	18	100	0	84	28	11	9	50	1.70
142297--142361	2	33.0	2	96	3	123	49	0	0	50	1.00
143174--143207	16	2.1	16	94	0	59	61	8	5	23	1.47
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
157967--157998	15	2.1	15	94	0	55	6	25	15	53	1.65
164140--164199	31	1.9	32	86	3	86	55	3	3	38	1.33
164190--164235	21	2.2	21	84	0	56	45	10	2	41	1.51
166455--166497	20	2.1	20	83	12	52	48	6	13	30	1.69
166455--166630	73	2.5	69	85	6	219	42	11	11	34	1.78
166527--166581	20	2.8	19	86	8	74	43	10	14	30	1.80
172306--172358	25	2.1	25	89	0	79	26	16	7	49	1.73
172314--172367	25	2.2	25	83	6	65	24	18	7	50	1.72
175454--175501	4	11.8	4	78	12	53	2	29	0	68	1.01
175472--175532	21	3.0	20	85	9	70	1	36	0	62	1.05

Tables:   1   2   3   4   5