genome.fa.s8570.2.7.7.80.10.50.1000.4.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008570.1 Hibiscus syriacus cultivar Beakdansim tig00111495_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  912507

Tables:   1   2   3   4   5   

This is table  4  of  5  ( 580 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
555558--555728	40	4.2	40	83	4	193	19	18	23	38	1.94
555694--555791	21	4.7	21	70	10	76	23	19	19	37	1.94
555778--555831	20	2.7	19	75	8	63	16	18	31	33	1.93
556425--556562	21	6.7	21	71	6	77	37	25	16	20	1.93
556529--556721	20	9.6	20	81	3	210	35	25	19	19	1.95
557103--557173	33	2.2	33	89	0	106	11	23	16	47	1.79
557266--557329	20	3.2	20	84	4	92	45	17	25	12	1.83
557246--557362	41	3.1	38	78	14	127	45	17	25	11	1.82
557253--557328	21	3.7	21	83	3	100	44	17	25	13	1.84
557313--557369	14	3.7	14	75	20	60	43	22	24	8	1.81
557305--557385	33	2.5	33	93	0	135	45	23	22	8	1.79
557381--557478	19	5.7	19	68	22	72	10	24	23	41	1.85
557403--557492	14	5.7	14	74	23	81	8	25	24	41	1.84
557386--557500	33	3.5	33	95	0	203	9	24	21	44	1.82
559198--559671	93	5.1	93	99	0	930	22	12	18	45	1.83
559715--559824	19	6.3	19	74	20	87	46	24	18	10	1.81
559752--559808	14	3.7	14	77	20	60	45	22	21	10	1.82
559733--559824	33	2.8	33	91	0	148	46	23	19	9	1.80
559820--559954	19	7.6	19	73	16	119	11	18	23	46	1.81
559842--559898	14	3.7	14	75	20	51	10	19	22	47	1.80
559825--559917	33	2.8	33	93	0	159	10	19	21	48	1.79
561882--561917	14	2.6	14	95	0	63	33	0	22	44	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
562024--562104	19	4.5	19	80	16	109	44	17	23	14	1.86
562111--562259	19	8.6	19	73	21	139	15	22	18	43	1.87
562111--562227	52	2.2	52	95	0	207	16	21	17	44	1.87
562168--562259	33	2.8	33	98	1	175	13	23	18	44	1.85
562187--562241	14	3.6	14	73	21	56	10	23	20	45	1.82
562318--562487	19	9.4	19	83	13	225	45	16	22	14	1.84
562318--562467	52	2.9	52	98	1	291	46	17	22	14	1.84
562388--562506	33	3.4	33	81	15	157	44	16	24	14	1.85
562318--562506	73	2.6	72	88	6	260	44	16	23	14	1.85
564825--564849	12	2.1	12	100	0	50	0	28	0	72	0.86
565023--565068	24	2.0	23	87	12	67	36	21	15	26	1.93
565750--565999	20	12.5	20	84	3	261	19	18	24	37	1.94
565966--566063	21	4.7	21	75	6	74	22	18	21	37	1.94
565966--566064	42	2.4	43	77	11	100	22	18	22	37	1.94
570603--570677	20	3.7	20	76	3	78	30	21	21	26	1.98
570623--570713	21	4.4	21	79	8	105	34	24	19	21	1.97
570601--570698	41	2.4	41	94	0	169	32	21	21	24	1.98
571345--571403	25	2.4	25	100	0	118	32	16	13	37	1.88
571674--571762	21	4.3	21	74	8	92	20	19	25	34	1.96
571710--571784	20	3.7	20	75	10	80	25	17	22	34	1.96
571689--571805	41	2.9	41	87	5	173	23	19	22	35	1.96
571688--571807	21	5.8	20	73	14	102	22	19	21	36	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
572446--572489	20	2.3	18	88	7	61	63	0	2	34	1.07
572637--572668	2	16.0	2	100	0	64	50	0	0	50	1.00
572679--572712	11	3.0	11	87	8	50	67	0	2	29	1.05
572679--572713	12	3.0	12	91	4	54	65	0	2	31	1.07
573931--573990	3	20.0	3	80	13	70	60	0	0	40	0.97
573931--573990	18	3.3	18	82	13	79	60	0	0	40	0.97
574295--574433	45	3.1	45	88	1	199	34	20	20	23	1.97
574699--574737	17	2.4	17	95	4	71	51	5	0	43	1.24
575113--575216	45	2.3	45	91	0	163	33	20	21	25	1.97
575024--575413	121	3.2	121	88	2	613	33	20	20	24	1.97
575279--575488	76	2.8	76	95	0	366	36	20	19	23	1.95
575150--575511	197	1.8	195	86	3	521	34	21	19	24	1.97
576180--576236	22	2.6	22	94	0	96	36	12	15	35	1.85
576604--576711	54	2.0	54	85	3	146	27	20	13	37	1.91
577553--577709	75	2.2	69	82	11	178	30	22	14	32	1.94
582930--582991	20	2.8	22	79	18	74	30	20	29	19	1.97
586686--586749	24	2.8	24	71	21	66	31	20	28	20	1.97
587098--587137	21	1.9	21	94	0	71	50	2	15	32	1.57
587394--587448	27	2.0	27	82	0	65	38	18	21	21	1.94
588690--588774	43	2.0	43	88	0	125	35	23	9	31	1.87
590685--590726	2	21.0	2	95	0	75	50	2	0	47	1.14
591024--591057	11	3.0	11	87	8	50	67	0	2	29	1.05
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
591024--591058	12	3.0	12	91	4	54	65	0	2	31	1.07
592266--592346	3	27.0	3	79	9	76	58	0	1	40	1.06
595169--595245	31	2.4	32	78	8	95	27	29	27	15	1.96
596675--596737	26	2.4	26	89	0	99	17	14	23	44	1.85
599905--599962	20	2.9	20	86	0	89	20	25	10	43	1.84
607443--607484	2	21.0	2	95	0	75	52	0	47	0	1.00
607578--607629	21	2.4	22	87	6	70	19	7	3	69	1.29
607910--607985	32	2.3	31	76	10	80	63	3	9	23	1.41
608362--608403	22	2.0	21	85	4	57	59	4	2	33	1.31
610558--611227	85	7.9	85	84	3	736	35	18	17	28	1.94
610569--611227	171	3.9	170	82	3	743	35	18	17	27	1.94
610562--611227	256	2.6	255	83	3	811	35	18	17	28	1.94
613387--613430	19	2.4	17	88	11	61	25	4	0	70	1.06
613387--613422	9	3.9	9	85	7	54	22	5	0	72	1.05
616436--616471	18	2.0	18	88	0	54	19	16	33	30	1.94
618613--618676	12	5.4	12	88	3	85	10	12	48	28	1.75
618613--618676	23	2.7	24	85	4	85	10	12	48	28	1.75
618674--618734	24	2.6	25	78	17	69	44	0	0	55	0.99
623059--623098	10	4.0	10	84	12	55	32	27	0	40	1.57
623222--623443	111	2.0	111	90	0	354	37	9	9	44	1.68
624950--624988	18	2.2	18	100	0	78	30	30	17	20	1.96
625328--625390	6	11.5	6	73	19	57	31	19	34	14	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
625331--625386	15	3.7	15	82	0	76	32	17	35	14	1.90
625328--625398	21	3.4	21	84	3	90	32	18	35	14	1.90
625328--625383	9	6.2	9	78	0	58	32	19	35	12	1.89
625576--625660	35	2.5	33	76	14	82	24	8	10	56	1.60
628085--628215	51	2.6	50	78	8	124	17	28	31	22	1.97
629966--630005	21	1.9	21	84	0	53	20	17	17	45	1.86
630816--630876	29	2.1	29	87	3	88	50	11	14	22	1.75
631159--631308	81	1.9	81	84	0	201	32	22	16	28	1.95
633681--633739	18	3.5	17	76	15	52	62	3	1	32	1.21
635058--635130	31	2.4	31	88	0	101	30	23	16	30	1.96
636096--636199	51	2.0	52	86	1	147	33	14	8	43	1.76
636025--636261	116	2.0	116	92	1	395	34	13	10	41	1.79
639349--639387	20	2.0	20	89	0	60	35	10	20	33	1.86
644306--644383	24	3.2	24	75	7	77	47	17	15	19	1.83
645741--645769	11	2.6	11	100	0	58	27	27	27	17	1.97
647294--647403	55	2.0	55	89	0	166	35	33	16	14	1.89
647469--647551	24	3.5	24	73	12	80	44	16	14	24	1.85
648867--648913	16	2.8	16	93	6	76	38	6	10	44	1.65
648928--648973	24	2.0	24	91	4	76	23	28	34	13	1.92
654960--655025	24	2.8	23	73	19	64	60	18	18	3	1.49
660451--660481	11	2.7	12	95	5	55	29	0	41	29	1.56
668148--668175	13	2.2	13	100	0	56	71	0	0	28	0.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
668675--668817	64	2.2	64	91	1	223	30	22	17	29	1.97
669193--669245	20	2.7	20	96	0	97	33	15	22	28	1.94
673404--673452	16	3.1	15	91	5	53	20	0	36	42	1.52
673961--674230	105	2.6	105	89	1	425	23	21	17	37	1.94
675154--675192	18	2.1	19	86	13	55	10	12	0	76	1.01
680090--680116	3	9.0	3	100	0	54	33	0	0	66	0.92
692357--692404	23	2.1	23	92	0	78	35	8	18	37	1.81
693027--693477	182	2.5	182	92	1	753	27	15	13	43	1.85
693350--693813	112	4.1	112	93	0	714	25	14	14	46	1.82
693350--693813	225	2.1	224	90	2	734	25	14	14	46	1.82

Tables:   1   2   3   4   5