genome.fa.s8570.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008570.1 Hibiscus syriacus cultivar Beakdansim tig00111495_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  912507

Tables:   1   2   3   4   5   

This is table  2  of  5  ( 580 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
178471--178603	59	2.3	58	81	7	144	34	15	15	35	1.88
190020--190216	57	3.5	56	78	2	164	27	20	24	26	1.99
193546--193611	33	2.0	34	90	3	107	36	24	13	25	1.92
197505--197600	33	2.9	33	92	1	156	36	22	15	25	1.94
199188--199240	21	2.4	22	87	6	72	60	0	5	33	1.20
200791--200823	11	3.1	11	91	8	59	54	0	0	45	0.99
200792--200823	10	3.1	10	95	4	55	56	0	0	43	0.99
206573--208366	598	3.0	598	97	0	3407	34	12	12	41	1.80
208996--209104	52	2.1	52	84	0	137	35	2	6	55	1.40
209320--209349	11	2.7	11	100	0	60	43	0	0	56	0.99
209325--209369	13	3.6	13	82	11	51	44	2	0	53	1.13
209322--209364	12	3.6	11	82	14	50	37	2	0	60	1.10
210159--210209	13	3.9	13	81	0	66	33	23	11	31	1.91
210159--210209	26	2.0	26	88	0	75	33	23	11	31	1.91
210366--210410	2	22.5	2	100	0	90	48	0	0	51	1.00
223608--223679	19	3.7	18	72	17	56	31	29	25	13	1.94
223608--223681	29	2.5	30	84	6	98	31	28	25	14	1.95
223602--223681	9	8.3	9	75	13	70	30	27	27	15	1.96
223644--223682	21	1.9	21	94	5	71	33	25	25	15	1.95
233697--233727	7	4.3	7	95	4	53	0	16	0	83	0.64
233979--234041	24	2.4	27	82	10	78	39	20	1	38	1.62
235934--235960	2	13.5	2	100	0	54	48	0	51	0	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
245173--245214	16	2.6	16	96	0	75	69	4	9	16	1.33
250695--250733	20	2.0	20	84	0	51	35	12	7	43	1.72
251264--251314	20	2.5	20	74	0	57	13	17	13	54	1.70
251215--251910	112	6.3	111	90	2	1033	25	14	14	45	1.82
251228--251909	332	2.0	336	90	2	1070	24	14	14	46	1.82
253647--253704	25	2.2	26	84	6	73	43	3	1	51	1.28
255167--255214	21	2.3	21	78	7	53	33	8	2	56	1.41
256882--256938	18	3.2	18	75	7	53	63	3	0	33	1.12
256979--257014	11	3.2	12	92	7	58	33	0	0	66	0.92
262586--262630	11	4.2	10	81	13	54	77	8	13	0	0.98
262579--262630	16	3.3	16	77	17	56	76	9	13	0	1.01
262600--262648	21	2.2	22	85	7	64	77	10	10	2	1.07
262589--262642	18	2.9	19	75	13	67	77	7	14	0	0.97
262578--262648	37	1.9	36	88	5	106	74	11	12	1	1.13
265038--265499	106	4.3	106	89	1	649	35	24	18	22	1.96
267045--267121	4	18.5	4	74	15	50	19	6	1	72	1.13
267222--267259	14	2.7	14	91	0	67	13	15	0	71	1.16
278058--278258	55	3.7	55	95	1	350	28	20	21	28	1.98
279061--279121	28	2.2	28	82	5	70	18	22	27	31	1.97
282392--282592	55	3.7	55	94	1	325	30	19	20	29	1.97
283397--283457	28	2.2	29	82	8	81	21	21	27	29	1.98
283790--283827	17	2.4	16	91	8	60	39	7	13	39	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
283796--283830	17	2.1	17	100	0	70	34	11	17	37	1.85
285449--285609	34	4.9	33	71	22	101	51	3	3	41	1.35
285470--285595	34	3.8	32	73	18	107	50	3	3	42	1.34
285477--285599	63	2.0	62	83	13	155	51	3	2	43	1.31
293344--293385	22	1.9	22	90	0	66	40	9	16	33	1.81
297912--297952	2	20.5	2	100	0	82	48	0	0	51	1.00
298537--298586	22	2.4	22	86	6	68	38	10	18	34	1.84
300499--300561	26	2.4	26	100	0	126	19	12	4	63	1.46
303411--303443	15	2.2	15	89	10	50	63	3	0	33	1.10
304493--304561	36	1.9	36	87	0	102	27	7	27	37	1.83
304587--304630	19	2.3	19	92	0	70	25	0	27	47	1.52
305055--305093	20	1.9	20	89	5	60	28	20	12	38	1.89
305080--305138	20	2.9	21	92	7	95	35	25	10	28	1.89
305081--305216	40	3.4	39	78	4	101	33	22	9	33	1.87
306010--306043	12	2.8	12	90	0	50	55	29	0	14	1.40
306167--306222	24	2.3	24	87	0	85	25	17	17	39	1.92
308478--308518	18	2.3	18	86	0	55	53	24	2	19	1.57
308693--308730	20	1.9	20	88	0	58	28	18	21	31	1.97
308741--308783	20	2.2	20	86	0	59	18	18	23	39	1.92
308858--308950	27	3.0	32	70	17	106	54	16	2	26	1.53
308849--308991	60	2.3	62	91	4	227	50	18	1	30	1.55
310345--310414	21	3.4	20	84	4	95	21	21	35	21	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
310345--310465	41	2.9	41	84	7	156	24	19	35	20	1.95
310348--310465	42	2.9	41	83	7	150	25	17	36	20	1.94
310345--310461	21	5.7	20	75	12	87	23	18	35	21	1.95
310744--310795	21	2.5	21	87	0	68	32	26	19	21	1.97
310757--310879	63	2.0	63	80	3	140	32	31	12	23	1.91
312605--312649	20	2.2	20	100	0	90	13	13	17	55	1.69
312605--312664	20	3.0	20	90	0	57	20	11	15	53	1.72
313185--313235	20	2.5	20	93	0	84	21	17	21	39	1.93
313260--313305	21	2.2	21	96	0	65	36	17	26	19	1.94
314822--314877	28	2.0	28	89	0	85	25	25	17	32	1.97
317271--317575	77	3.9	77	85	3	385	36	18	12	32	1.88
322395--322473	35	2.3	33	91	6	131	40	0	0	59	0.97
322482--322631	30	5.1	30	66	22	88	53	0	8	37	1.37
322620--322659	18	2.2	19	90	4	64	57	0	0	42	0.98
322636--322727	29	3.6	24	77	18	89	54	0	2	43	1.12
323025--323091	31	2.2	31	91	0	107	50	7	11	29	1.66
323037--323098	31	2.0	31	93	0	106	51	6	9	32	1.60
325161--325300	23	6.4	23	79	12	179	19	20	23	36	1.95
325152--325244	42	2.2	43	94	3	161	18	20	25	35	1.95
325161--325300	65	2.2	65	98	0	271	19	20	23	36	1.95
325229--325311	42	2.0	42	95	0	148	20	18	24	37	1.94
325927--325963	6	6.5	6	90	3	51	2	16	51	29	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
326053--326093	21	2.0	21	95	0	73	26	24	24	24	2.00
326102--326300	21	9.5	21	78	9	201	24	23	23	28	1.99
326101--326300	42	4.8	42	88	4	280	25	23	23	28	1.99
331041--331216	58	3.1	58	95	4	331	21	22	18	38	1.94
331306--331387	41	2.0	42	85	7	114	47	12	12	28	1.76
333171--333210	14	2.9	14	92	0	62	12	10	17	60	1.59
333403--333446	10	4.4	10	85	0	61	6	9	20	63	1.46
333403--333470	20	3.4	20	75	0	64	8	11	17	61	1.54
333507--333547	21	1.9	22	90	5	66	43	9	24	21	1.83
334156--334254	21	4.8	20	75	6	81	37	23	18	21	1.94
334221--334490	20	13.5	20	79	6	251	37	24	17	20	1.94
334260--334490	40	5.8	40	90	4	279	35	24	17	22	1.95
335170--335216	24	2.0	24	87	8	69	25	14	21	38	1.92
337646--337794	19	8.4	19	77	18	178	46	18	20	14	1.83
337674--337794	51	2.2	56	88	8	180	47	16	21	14	1.83
337699--337823	37	3.8	31	86	9	144	45	18	20	15	1.85
337838--337916	19	4.4	19	80	16	105	13	22	17	45	1.84
338023--338059	14	2.6	14	91	0	65	45	21	0	32	1.52
340032--340088	14	3.7	14	77	20	60	45	22	21	10	1.82
340013--340105	33	2.8	33	95	0	168	47	21	20	10	1.80
339976--340110	19	7.6	19	76	16	128	45	23	19	11	1.82
340106--340234	19	7.3	19	75	17	125	9	17	28	44	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
340106--340197	33	2.8	33	93	3	150	7	18	28	45	1.76
340285--340748	93	5.0	93	99	0	903	46	19	12	21	1.83
342505--342561	14	3.7	14	75	20	60	8	24	22	43	1.81
342489--342569	33	2.5	33	95	0	144	8	22	22	46	1.78
342546--342621	21	3.7	21	83	3	109	11	25	17	46	1.82
342545--342622	41	1.9	41	97	0	147	12	25	16	44	1.83
342699--342769	33	2.2	33	92	0	115	47	18	22	11	1.80
342951--343005	22	2.5	22	81	0	74	20	16	40	23	1.91
343152--343305	20	7.7	20	81	7	168	18	18	26	37	1.93
343151--343305	40	3.8	40	82	4	186	18	18	26	37	1.93

Tables:   1   2   3   4   5