genome.fa.s8577.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008577.1 Hibiscus syriacus cultivar Beakdansim tig00111506_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1329373

Tables:   1   2   3   4   5   

This is table  3  of  5  ( 525 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
598752--598804	22	2.4	22	74	0	52	33	9	18	37	1.83
608168--608227	2	30.5	2	83	9	79	55	0	1	43	1.10
614693--614724	2	16.0	2	100	0	64	0	50	0	50	1.00
616699--616723	2	12.5	2	100	0	50	48	0	0	52	1.00
618237--618367	67	2.0	67	95	0	235	25	11	15	48	1.78
628414--628482	28	2.4	30	84	13	85	42	1	1	55	1.18
637638--637706	36	2.0	36	91	5	115	26	11	8	53	1.65
643513--643556	18	2.4	18	92	0	70	20	2	9	68	1.28
644128--644173	22	2.0	23	87	4	67	58	0	0	41	0.98
644124--644192	18	3.7	18	71	21	52	53	0	1	44	1.09
644295--644328	17	1.9	18	94	5	61	50	0	2	47	1.16
645523--645598	32	2.4	32	95	0	134	47	25	11	15	1.80
645547--645599	16	3.3	16	74	10	63	47	24	11	16	1.80
646155--646225	16	4.3	16	80	8	72	60	0	1	38	1.06
648905--648951	16	2.8	17	81	18	62	38	6	25	29	1.81
653488--653534	2	24.0	2	95	4	87	48	0	0	51	1.00
653488--653540	8	7.3	7	91	8	56	47	0	1	50	1.12
662448--662834	183	2.1	183	90	3	611	46	7	2	43	1.45
664144--664615	180	2.6	181	89	0	694	42	13	16	26	1.86
664536--664582	20	2.4	19	82	10	67	53	10	17	19	1.72
664547--664587	20	2.2	19	83	12	50	51	14	17	17	1.77
666426--666679	87	2.9	87	90	0	402	34	12	9	43	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
666597--666641	23	2.0	23	86	0	63	37	15	8	37	1.79
681340--681427	23	3.8	23	81	3	104	15	12	15	55	1.69
681358--681465	24	4.5	24	78	2	92	11	15	18	54	1.70
681340--681449	47	2.3	47	77	0	112	14	14	16	54	1.71
682513--682565	16	3.4	15	82	15	63	64	0	0	35	0.94
682521--682565	15	2.8	15	86	10	54	68	0	0	31	0.89
683032--683075	23	2.0	21	86	8	61	75	2	0	22	0.92
684237--684292	27	2.1	27	96	0	103	25	23	25	26	2.00
688014--688045	2	16.0	2	100	0	64	50	0	50	0	1.00
690674--690737	30	2.1	30	82	5	76	42	3	6	48	1.44
693270--693310	20	2.0	20	95	0	73	31	4	17	46	1.69
695139--695222	39	2.1	41	82	4	100	58	3	1	36	1.23
695243--695288	22	2.2	22	84	7	60	69	0	8	21	1.15
699857--699917	27	2.4	25	81	10	77	42	6	6	44	1.56
699864--699917	27	2.0	27	92	0	90	44	7	7	40	1.60
702100--702149	23	2.2	23	85	0	64	58	14	12	16	1.64
702100--702156	23	2.5	23	82	0	60	56	14	14	15	1.68
707817--707892	34	2.2	34	95	0	134	26	13	18	42	1.87
708366--708770	200	2.0	202	99	0	796	27	15	22	33	1.95
716701--716731	2	15.5	2	100	0	62	51	0	0	48	1.00
723275--723312	19	2.1	19	85	9	53	36	0	2	60	1.11
725709--725761	25	2.1	25	96	0	97	37	16	9	35	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
727530--727571	14	3.0	14	96	0	75	21	40	28	9	1.84
727588--727620	14	2.4	14	94	0	57	24	39	30	6	1.79
727612--727685	33	2.2	33	85	4	105	33	25	31	9	1.88
729998--730062	32	2.0	33	81	3	78	36	3	3	56	1.30
735641--735732	47	2.0	47	100	0	184	32	17	15	34	1.91
737820--737866	20	2.3	20	89	10	78	55	10	17	17	1.69
737608--738081	182	2.6	183	88	1	666	42	14	16	26	1.86
739535--739571	18	2.1	18	89	0	56	32	5	10	51	1.60
739527--739573	24	2.0	24	86	0	67	34	4	14	46	1.64
739829--739915	39	2.2	39	87	0	129	49	20	12	17	1.79
746808--747220	54	7.5	53	72	17	188	53	9	0	36	1.37
746824--746974	80	1.9	80	91	5	252	53	8	0	37	1.32
746907--746968	18	3.7	17	75	18	67	54	8	0	37	1.30
746903--746990	18	4.8	20	66	23	59	53	7	0	38	1.30
746921--747252	32	10.5	32	69	23	161	53	9	0	35	1.39
746924--747085	54	2.9	54	83	8	200	53	10	1	35	1.43
747055--747108	14	3.6	14	77	18	63	57	3	1	37	1.27
747097--747141	22	2.0	22	100	0	90	48	13	0	37	1.42
747095--747147	22	2.4	22	90	6	81	52	11	0	35	1.37
747142--747188	22	2.1	22	88	7	69	57	6	0	36	1.24
747151--747194	22	2.0	22	95	0	79	52	11	0	36	1.38
747153--747201	22	2.2	22	85	3	62	59	10	0	30	1.31
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
747195--747248	14	3.6	14	72	18	54	59	7	0	33	1.25
746975--747257	32	9.7	32	75	18	267	53	10	0	34	1.41
746801--747302	86	6.0	85	74	15	422	53	9	0	36	1.38
747286--747317	15	2.2	15	94	5	57	56	0	0	43	0.99
747237--747337	22	4.5	22	69	7	67	51	7	0	39	1.38
748199--748231	14	2.4	14	100	0	66	21	27	15	36	1.93
748552--748608	30	2.0	28	80	12	64	35	8	7	49	1.61
749221--749278	21	2.7	22	81	7	66	25	10	3	60	1.45
751622--751698	29	2.7	29	95	4	138	15	35	25	23	1.94
751760--751791	14	2.3	14	94	0	55	6	31	37	25	1.81
757637--757755	32	3.7	31	80	4	130	47	0	3	48	1.24
757674--757729	21	2.7	20	81	13	60	50	1	3	44	1.29
757815--757928	56	2.0	56	98	0	219	43	8	4	42	1.55
759606--759683	35	2.2	35	97	0	147	34	11	21	32	1.89
765807--765850	22	2.0	23	81	4	54	18	11	18	52	1.74
775762--775794	17	1.9	17	100	0	66	48	9	0	42	1.35
776831--776865	19	1.9	18	88	11	54	11	14	17	57	1.66
782663--782700	20	1.9	20	88	0	58	21	26	10	42	1.85
786891--787023	66	2.0	66	100	0	266	41	10	4	43	1.59
787603--787642	19	2.0	20	85	4	55	42	0	2	55	1.13
788711--788751	20	2.0	21	95	4	75	53	4	2	39	1.35
791308--791332	2	12.5	2	100	0	50	48	0	0	52	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
799813--799904	46	2.0	44	95	4	166	35	2	2	59	1.21
800503--800546	22	2.0	22	82	8	54	63	2	0	34	1.07
806299--806370	24	3.0	24	75	13	76	52	11	1	34	1.45
810981--811009	14	2.1	14	93	6	51	34	0	0	65	0.93
811469--811497	10	3.0	10	95	5	51	20	0	0	79	0.74
817156--817199	15	2.9	15	79	3	52	27	4	2	65	1.23
817431--817465	13	2.8	13	91	4	54	28	0	8	62	1.24
819983--820072	45	2.0	45	93	0	153	21	30	34	14	1.93
820489--820540	5	10.4	5	89	0	59	30	0	7	61	1.24
820489--820540	10	5.2	10	85	0	68	30	0	7	61	1.24
821442--821467	12	2.2	12	100	0	52	7	26	23	42	1.81
821494--821603	33	3.3	33	93	0	175	17	37	25	20	1.94
821927--821992	24	2.8	24	95	0	114	37	15	31	15	1.88
829112--829146	2	17.5	2	100	0	70	51	0	0	48	1.00
829883--829912	12	2.5	12	88	0	51	50	3	0	46	1.18
834712--834769	6	9.7	6	100	0	116	15	32	0	51	1.44
835173--835197	2	12.5	2	100	0	50	52	0	0	48	1.00
841456--841533	2	39.5	2	94	2	140	51	0	0	48	1.00
842324--842358	11	3.1	11	84	8	52	31	0	0	68	0.90
842315--842376	23	2.7	23	87	0	88	43	0	1	54	1.09
851284--851445	80	2.1	77	95	3	288	30	17	6	45	1.74
853495--853544	27	1.9	26	92	8	84	30	12	10	48	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
866377--866414	18	2.2	18	85	4	51	73	2	5	18	1.14
872594--872631	19	2.0	19	89	0	58	44	21	0	34	1.52
874158--874197	19	2.1	19	100	0	80	20	20	27	32	1.97
885196--885252	27	2.1	27	83	0	69	43	10	15	29	1.80
891684--891745	32	1.9	32	90	6	99	54	8	16	20	1.67
899634--899690	30	1.9	30	85	0	78	33	7	24	35	1.82
904602--904674	23	3.2	21	77	9	65	34	12	10	42	1.78
904612--904674	23	2.7	23	82	7	74	36	11	11	41	1.76
905561--905607	22	2.2	22	84	3	60	55	6	2	36	1.37
909808--909832	9	2.8	9	100	0	50	60	12	8	20	1.57

Tables:   1   2   3   4   5