genome.fa.s8577.2.7.7.80.10.50.1000.5.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008577.1 Hibiscus syriacus cultivar Beakdansim tig00111506_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1329373

Tables:   1   2   3   4   5   

This is table  5  of  5  ( 525 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1189021--1189250	112	2.1	112	97	1	435	35	13	16	34	1.87
1189760--1189813	28	1.9	28	96	0	99	50	0	3	46	1.19
1192089--1192139	16	3.1	17	78	16	63	45	0	0	54	0.99
1207122--1207159	19	2.0	19	100	0	76	21	15	31	31	1.94
1211811--1211840	14	2.1	14	93	0	51	30	33	0	36	1.58
1214292--1214330	13	3.0	13	96	0	69	48	7	0	43	1.31
1214322--1214380	30	1.9	30	82	6	73	49	5	3	42	1.41
1214890--1214914	11	2.3	11	100	0	50	56	0	0	44	0.99
1215079--1215118	21	2.0	21	85	5	55	47	5	5	42	1.47
1224968--1225070	54	1.9	54	83	0	134	37	17	15	29	1.91
1230899--1230928	14	2.2	13	94	5	51	30	0	0	70	0.88
1235012--1235041	13	2.3	13	100	0	60	36	16	0	46	1.47
1239208--1239241	12	2.8	12	95	4	59	29	8	50	11	1.69
1266542--1266671	60	2.2	60	81	10	142	40	15	10	33	1.80
1277693--1277735	21	2.0	21	82	8	52	51	0	0	48	1.00
1282247--1282294	21	2.3	20	80	16	53	27	0	16	56	1.41
1290044--1290089	23	2.0	23	83	8	58	26	15	17	41	1.88
1290968--1291011	23	1.9	23	90	0	70	40	4	9	45	1.56
1291440--1291480	21	1.9	22	85	5	57	51	12	0	36	1.40
1304864--1304915	20	2.6	20	96	0	95	38	26	13	21	1.90
1304971--1305164	20	9.6	20	76	8	76	35	25	19	19	1.95
1304967--1305164	40	5.0	39	81	4	200	35	26	19	19	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1304971--1305163	60	3.2	60	83	0	251	35	25	19	19	1.95
1305544--1305614	33	2.2	33	92	0	115	11	22	18	47	1.80
1305735--1305789	14	3.6	14	73	21	56	41	23	25	9	1.83
1305735--1305805	33	2.2	33	94	0	124	43	25	22	8	1.81
1305806--1305919	33	3.5	33	91	1	185	10	23	21	44	1.83
1305801--1305897	19	5.7	18	70	21	75	11	23	22	42	1.86
1305855--1305911	14	3.7	14	79	20	69	8	26	24	40	1.84
1307617--1308085	92	5.1	93	96	2	885	22	12	18	46	1.83
1308129--1308257	19	7.3	19	75	17	125	45	28	17	8	1.77
1308165--1308257	33	2.8	32	91	4	150	46	27	18	7	1.76
1308129--1308257	52	2.5	52	74	14	140	45	28	17	8	1.77
1308253--1308387	19	7.6	19	75	16	128	11	19	23	45	1.82
1308275--1308331	14	3.7	14	77	20	60	10	21	22	45	1.82
1308258--1308350	33	2.8	33	95	0	168	10	20	21	47	1.80
1310292--1310325	14	2.4	14	95	0	59	38	0	20	41	1.53
1310426--1310526	19	5.6	19	82	15	142	43	17	23	14	1.87
1310555--1310846	19	16.4	19	82	14	383	14	20	18	46	1.83
1310574--1310818	52	4.6	52	91	6	313	14	21	17	46	1.83
1313122--1313146	12	2.1	12	100	0	50	0	28	0	72	0.86
1314041--1314389	20	17.5	20	85	4	427	20	19	25	34	1.96
1317336--1317421	14	5.7	15	69	18	54	65	1	1	32	1.08
1317747--1317812	31	2.2	30	83	2	78	45	10	7	36	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1326689--1326755	23	3.0	22	80	2	71	28	26	25	19	1.99

Tables:   1   2   3   4   5

The End!