genome.fa.s8579.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008579.1 Hibiscus syriacus cultivar Beakdansim tig00111513_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  396338

Tables:   1   2   

This is table  2  of  2  ( 183 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
293754--293905	73	2.1	73	92	0	250	40	6	9	42	1.64
293915--293971	20	2.8	20	75	19	64	43	1	8	45	1.45
294020--294069	22	2.3	22	86	6	66	48	6	2	44	1.39
294027--294076	22	2.2	24	89	7	77	48	4	2	46	1.32
294217--294328	2	54.5	2	71	15	77	45	4	2	47	1.37
294243--294325	22	3.9	22	80	15	102	45	4	2	46	1.37
294245--294327	42	1.9	44	92	4	143	45	4	2	46	1.37
294191--294323	20	6.7	19	75	15	110	43	4	5	46	1.46
294411--295104	216	3.3	216	90	1	1064	28	11	8	50	1.68
298286--298310	2	12.5	2	100	0	50	48	0	0	52	1.00
299128--299171	21	2.1	21	83	8	54	45	4	22	27	1.72
300956--301028	20	3.6	20	82	12	69	46	10	17	24	1.80
300980--301028	20	2.5	20	89	0	71	46	12	18	22	1.82
302270--302338	29	2.4	29	80	4	68	28	5	11	53	1.60
302909--302939	14	2.2	14	94	0	53	35	0	0	64	0.94
303378--303446	31	2.2	31	97	0	129	31	13	20	34	1.91
303804--303843	20	2.0	20	95	0	71	20	15	22	42	1.88
303806--303851	20	2.3	20	88	0	65	23	17	21	36	1.94
305500--305574	35	2.1	35	87	4	107	44	13	12	30	1.80
310783--310887	55	1.9	56	90	5	169	30	5	15	48	1.68
324187--324223	19	1.9	19	100	0	74	18	16	10	54	1.71
328080--328118	20	2.0	20	89	0	60	46	2	0	51	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
328411--328445	15	2.2	16	90	5	54	51	8	0	40	1.33
328846--328910	23	2.8	23	90	0	103	9	38	30	21	1.85
329359--329402	23	1.9	23	90	0	70	40	11	4	43	1.61
332780--332819	21	1.9	21	84	0	53	12	12	10	65	1.49
335067--335093	5	5.4	5	100	0	54	22	18	18	40	1.91
336038--336075	18	2.1	18	100	0	76	42	15	18	23	1.89
338075--338135	21	2.9	21	87	4	86	26	26	22	24	2.00
338077--338135	22	2.8	21	87	5	82	25	27	23	23	2.00
338487--338514	13	2.2	13	100	0	56	39	7	21	32	1.80
339709--339803	14	6.6	14	74	20	54	70	1	1	27	1.01
339709--339747	7	5.6	7	90	0	60	64	0	0	35	0.94
339743--339784	17	2.5	17	84	7	59	71	0	2	26	0.98
339742--339804	17	3.2	20	73	26	55	73	1	1	23	1.01
339777--339871	25	4.0	24	74	9	79	74	3	10	11	1.17
340021--340113	2	46.5	2	100	0	186	50	0	0	49	1.00
340318--340403	5	16.8	5	70	21	54	76	0	4	18	0.95
340324--340402	37	2.3	34	81	16	92	77	0	5	17	0.95
340320--340411	16	5.7	15	73	24	55	77	0	5	17	0.96
340531--340579	17	2.8	17	81	6	53	73	4	4	18	1.15
341864--341923	23	2.7	23	77	12	70	61	0	5	33	1.17
341868--341912	23	2.0	23	90	0	72	57	0	6	35	1.25
345993--346048	27	2.0	27	83	16	71	46	0	3	50	1.19
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
346081--346248	84	2.0	84	100	0	336	44	11	9	34	1.74
346402--346436	17	2.1	17	88	0	52	17	8	11	62	1.52
346574--346603	16	1.9	16	93	6	53	60	6	0	33	1.23
346560--346656	28	3.4	27	76	18	90	56	4	3	36	1.34
346560--346656	14	6.8	14	72	18	58	56	4	3	36	1.34
355928--356002	32	2.3	32	100	0	150	21	20	21	37	1.95
364293--364329	19	1.9	19	100	0	74	62	0	16	21	1.33
364950--364982	17	1.9	17	93	0	57	54	6	24	15	1.63
367002--367055	24	2.2	24	83	9	74	61	3	0	35	1.14
366982--367050	32	2.3	29	85	7	84	60	1	0	37	1.06
368054--368113	31	1.9	31	96	0	111	43	21	11	23	1.85
370980--371033	24	2.2	24	83	9	74	61	3	0	35	1.14
370960--371028	32	2.3	29	85	7	84	60	1	0	37	1.06
372028--372087	31	1.9	31	96	0	111	43	21	11	23	1.85
374130--374172	21	2.0	21	82	8	52	55	9	9	25	1.61
379481--379526	8	5.0	10	80	20	64	43	13	0	43	1.43
379479--379526	18	2.7	18	100	0	96	41	12	0	45	1.42
384629--385090	7	67.0	7	97	2	875	0	14	56	29	1.39
385088--396338	7	1646.9	7	90	6	17251	12	1	42	43	1.52

Tables:   1   2

The End!