Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008592.1 Hibiscus syriacus cultivar Beakdansim tig00111541_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  876692

Tables:   1   2   3   4   

This is table  4  of  4  ( 393 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
813350--813408
29
2.0
29
87
12
86
22
38
25
13
1.90
813484--813542
29
2.0
29
93
0
100
25
30
32
11
1.92
821066--821119
18
3.0
17
77
20
56
75
0
1
22
0.89
821053--821103
23
2.3
23
86
6
70
74
1
1
21
1.02
822402--822798
2
205.5
2
69
24
225
52
5
1
41
1.32
822404--822799
5
78.2
5
69
21
135
52
5
1
40
1.32
822396--822799
83
5.1
77
78
16
305
52
5
0
40
1.32
823736--823785
20
2.5
20
83
6
66
34
26
20
20
1.96
826917--827139
105
2.1
104
81
4
252
23
15
22
38
1.92
828132--828174
21
2.0
21
86
0
59
30
27
25
16
1.97
828154--828305
68
2.2
68
88
1
216
26
27
26
18
1.98
828607--828677
28
2.5
29
90
2
108
39
9
12
38
1.77
828692--828751
30
2.0
31
90
3
95
36
6
23
33
1.81
828971--829037
22
3.0
22
100
0
134
19
26
26
26
1.99
835068--835110
21
2.0
21
86
0
59
30
27
25
16
1.97
835090--835241
68
2.2
68
88
1
216
26
27
26
18
1.98
835544--835615
29
2.5
29
93
0
117
38
9
12
38
1.76
835630--835689
30
2.0
31
90
3
95
36
6
23
33
1.81
835909--835975
22
3.0
22
100
0
134
19
26
26
26
1.99
854745--854808
28
2.2
28
97
2
119
28
6
20
45
1.75
855475--855521
14
3.4
14
90
0
67
8
34
36
21
1.84
857129--857186
27
2.1
27
84
12
75
50
0
0
50
1.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
857206--857250
23
2.0
23
86
0
63
53
2
2
42
1.25
857331--857369
13
2.9
13
81
7
51
61
0
0
38
0.96
857355--857422
23
2.8
24
76
19
68
52
0
1
45
1.09
858958--859009
26
2.0
26
100
0
104
23
3
23
50
1.66
863193--863251
30
2.0
30
93
3
102
25
6
13
54
1.64
871010--871049
16
2.5
16
95
0
71
15
17
20
47
1.83
871032--871082
25
2.0
26
88
3
77
21
11
21
45
1.84
875113--875270
79
2.0
78
91
3
255
46
2
4
46
1.36
875742--875773
14
2.3
14
100
0
64
18
34
0
46
1.49
875742--875781
14
2.9
14
92
0
53
20
32
0
47
1.50
876296--876339
20
2.2
20
83
4
52
31
9
18
40
1.81

Tables:   1   2   3   4

The End!