genome.fa.s8607.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008607.1 Hibiscus syriacus cultivar Beakdansim tig00111563_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  531970

Tables:   1   2   

This is table  2  of  2  ( 231 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
313731--313798	23	3.0	23	86	0	82	22	26	25	26	2.00
319222--319255	2	17.0	2	100	0	68	50	0	0	50	1.00
320343--320398	29	1.9	29	96	0	103	12	37	30	19	1.89
320416--320475	23	2.6	23	86	5	77	10	36	26	26	1.88
320483--320510	14	2.0	14	100	0	56	7	28	42	21	1.79
320463--320496	10	3.4	10	84	15	52	8	29	38	23	1.85
320552--320609	29	2.0	29	86	0	80	24	27	34	13	1.93
324588--324657	12	5.8	12	80	6	79	51	18	15	14	1.77
324585--324694	48	2.3	47	84	4	139	48	17	16	18	1.82
324586--324694	24	4.5	25	78	6	109	47	17	16	18	1.83
329721--329790	12	5.8	12	80	6	79	51	18	15	14	1.77
329718--329827	48	2.3	47	84	4	139	48	17	16	18	1.82
329719--329827	24	4.5	25	78	6	109	47	17	16	18	1.83
334842--334911	12	5.8	12	80	6	79	51	18	15	14	1.77
334839--334948	48	2.3	47	84	4	139	48	17	16	18	1.82
334840--334948	24	4.5	25	78	6	109	47	17	16	18	1.83
341197--341230	3	11.3	3	87	0	50	5	0	67	26	1.13
342589--342613	3	8.3	3	100	0	50	64	0	0	36	0.94
342956--343073	15	7.5	15	78	13	121	44	0	2	51	1.20
343001--343128	36	3.6	36	71	11	113	40	0	6	52	1.32
343038--343073	14	2.5	14	95	4	63	38	0	0	61	0.96
343053--343666	32	20.4	31	67	23	191	35	0	11	53	1.37
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
342971--343128	69	2.3	67	85	8	205	42	0	5	51	1.28
343053--343763	54	13.1	54	68	19	331	35	0	11	53	1.38
343130--343172	22	2.0	22	95	0	77	37	0	11	51	1.39
343152--343301	80	1.9	80	98	0	291	33	0	13	53	1.40
343318--343360	22	2.0	22	95	0	77	37	0	11	51	1.39
343363--343442	18	4.4	18	68	22	60	31	0	13	55	1.39
343070--343472	188	2.1	185	86	7	546	34	0	12	53	1.39
343290--343843	80	6.8	82	86	9	689	34	0	12	53	1.39
343018--343858	242	3.5	239	82	11	965	35	0	11	53	1.38
343538--343602	22	3.0	22	97	0	121	38	0	10	50	1.37
343605--343661	18	3.4	17	70	20	57	33	0	10	56	1.34
343130--343661	220	2.4	213	84	12	776	34	0	12	53	1.38
343586--343665	14	5.0	16	69	22	69	35	0	10	55	1.34
343699--343746	14	3.1	15	75	21	53	41	0	4	54	1.20
343806--343848	22	2.0	22	100	0	86	34	0	13	51	1.42
343873--343931	31	1.9	31	89	0	91	44	10	5	40	1.60
344959--345019	30	1.9	33	83	9	83	52	0	6	40	1.27
345345--345392	20	2.4	19	83	13	60	41	2	4	52	1.32
345345--345391	21	2.3	20	85	10	60	40	2	4	53	1.32
345667--345719	15	3.6	15	70	14	56	5	24	1	67	1.22
345661--345716	29	1.9	29	100	0	112	7	26	1	64	1.29
362105--362138	9	3.9	9	92	7	61	35	0	0	64	0.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
362105--362142	17	2.3	17	95	4	69	34	0	0	65	0.93
362078--362156	21	4.0	21	73	23	64	32	1	1	64	1.09
364314--364358	12	3.7	12	79	5	54	17	4	13	64	1.44
376911--376972	6	10.3	6	87	0	61	40	1	9	48	1.46
376911--376972	12	5.3	12	84	5	74	40	1	9	48	1.46
376914--376972	18	3.3	18	90	0	82	38	1	10	49	1.47
376983--377045	19	3.4	19	64	27	53	31	7	25	34	1.85
376966--377050	37	2.3	37	100	0	170	31	7	22	38	1.81
378037--378089	23	2.3	23	84	9	72	15	18	9	56	1.65
386104--386200	47	2.1	47	98	0	185	32	16	7	43	1.75
386625--386684	2	30.0	2	100	0	120	50	0	0	50	1.00
386976--387054	41	1.9	41	94	0	140	36	13	3	45	1.62
388024--388135	30	3.6	29	67	17	73	25	22	14	38	1.91
388020--388145	63	2.0	63	96	0	234	24	21	16	37	1.94
388374--388407	17	1.9	18	88	5	52	8	5	5	79	1.05
398967--398993	14	1.9	14	100	0	54	88	11	0	0	0.50
399787--400699	105	8.7	105	93	1	1452	33	25	17	22	1.96
401077--401155	41	1.9	41	94	0	140	36	13	3	45	1.62
402060--402171	30	3.6	29	67	17	73	25	22	14	38	1.91
402056--402181	63	2.0	63	96	0	234	24	21	16	37	1.94
402407--402445	15	2.4	16	83	12	53	12	5	5	76	1.11
403539--403657	33	3.6	33	77	5	116	39	26	10	22	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
405815--405839	10	2.5	10	100	0	50	40	0	0	60	0.97
419685--419737	23	2.3	23	80	6	63	26	26	28	18	1.98
419745--419970	103	2.2	103	95	1	409	38	24	12	25	1.90
426620--426683	23	2.8	22	80	4	74	26	25	26	21	2.00
426699--426916	103	2.1	103	97	0	409	37	24	12	25	1.90
433537--433600	24	2.7	24	87	2	85	25	28	26	20	1.99
433617--433834	103	2.1	103	96	0	400	36	25	12	26	1.91
436621--436673	23	2.3	22	81	9	61	22	30	20	26	1.98
438580--438613	12	2.8	12	100	0	68	32	8	8	50	1.64
441554--441592	12	3.3	12	78	7	53	20	20	23	35	1.96
441518--441606	23	3.8	23	87	1	106	24	21	24	29	1.99
443002--443051	19	2.6	19	100	0	100	30	18	30	22	1.97
446056--446125	28	2.7	26	82	6	79	17	20	25	37	1.94
446076--446131	28	2.0	28	92	0	94	19	19	26	33	1.96
451972--452012	8	5.2	8	82	5	57	34	0	29	36	1.58
452083--452438	128	2.9	123	92	7	596	23	25	19	32	1.97
452833--452934	33	3.1	32	81	4	114	36	3	4	54	1.40
453444--453537	21	4.5	21	89	5	118	21	27	32	18	1.96
453541--453588	21	2.3	21	85	0	60	25	12	37	25	1.91
455258--455295	20	2.0	20	90	10	62	60	0	0	39	0.97
458051--458187	70	2.0	69	97	1	256	18	27	31	21	1.97
476026--476068	22	2.0	22	85	0	59	41	20	6	30	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
476343--476409	6	11.2	6	96	0	116	31	49	16	2	1.61
476407--476460	5	10.8	5	85	0	63	18	35	38	7	1.79
482315--482357	6	7.2	6	100	0	86	34	48	16	0	1.46
482355--482403	5	9.8	5	97	0	89	22	36	40	0	1.54
495803--495883	37	2.2	37	91	4	130	44	17	4	33	1.70
497051--497100	24	2.1	24	88	7	75	58	14	2	26	1.47
509106--509148	21	2.0	21	82	8	52	55	9	9	25	1.61
512595--512657	24	2.7	24	77	2	65	49	15	9	25	1.75
513347--513420	29	2.5	28	83	12	87	40	24	5	29	1.77
513456--513515	18	3.4	18	93	4	104	10	25	48	16	1.77
513456--513506	17	2.9	17	97	2	93	11	23	49	15	1.78
513450--513479	13	2.3	13	100	0	60	13	23	46	16	1.82
513518--513563	10	4.6	10	78	10	58	34	28	21	15	1.94
519785--519848	24	2.7	24	77	0	65	50	15	9	25	1.74
520540--520613	29	2.5	28	83	12	87	40	24	5	29	1.77
520648--520707	18	3.4	18	93	4	104	11	23	48	16	1.79
520648--520698	17	2.9	17	97	2	93	11	23	49	15	1.78
520642--520671	13	2.3	13	100	0	60	13	23	46	16	1.82
520710--520755	10	4.6	10	84	10	67	34	28	21	15	1.94
520710--520756	11	4.6	11	82	17	66	34	27	21	17	1.95
520718--520756	19	2.0	20	95	5	71	35	25	20	17	1.95
524940--525019	7	11.6	7	97	2	153	0	27	58	13	1.36
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
525017--531970	7	1011.3	7	94	5	10048	14	3	42	39	1.63

Tables:   1   2

The End!