genome.fa.s8613.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008613.1 Hibiscus syriacus cultivar Beakdansim tig00111569_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  647085

Tables:   1   2   3   4   

This is table  1  of  4  ( 443 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
650--679	14	2.1	14	93	0	51	40	16	0	43	1.48
4588--4666	32	2.5	32	83	4	106	34	34	13	17	1.90
8201--8254	20	2.8	20	85	2	65	35	12	14	37	1.85
9616--9651	16	2.1	17	90	10	56	50	13	0	36	1.43
10761--10922	29	5.7	28	79	2	162	37	6	22	33	1.81
10772--10928	85	1.9	84	85	6	219	38	7	21	33	1.80
11734--11781	22	2.1	23	96	3	89	20	14	27	37	1.92
17376--17526	29	5.3	29	74	4	119	38	6	21	33	1.80
17376--17495	56	2.1	58	82	3	145	38	7	23	30	1.82
19932--19977	19	2.4	19	85	3	56	32	17	17	32	1.93
25524--25576	21	2.5	21	81	6	72	20	26	18	33	1.96
25566--25697	20	6.6	20	84	6	160	39	19	20	20	1.93
26252--26296	19	2.4	19	88	0	63	51	26	13	8	1.70
26292--26470	19	10.1	19	69	19	118	12	22	20	45	1.84
26347--26445	33	3.0	33	87	1	144	12	23	22	42	1.87
26297--26396	52	1.9	52	95	0	182	11	21	21	47	1.81
26414--26470	20	2.8	20	79	10	62	14	22	19	43	1.86
28616--28682	21	3.2	21	66	6	55	23	35	20	19	1.95
28569--28682	42	2.7	41	81	5	104	22	35	19	21	1.96
30033--30068	14	2.6	14	95	0	63	30	0	25	44	1.54
30193--30249	14	3.7	14	70	20	51	47	22	21	8	1.78
30186--30248	33	1.9	33	100	0	126	50	20	19	9	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30259--30424	33	5.1	31	80	11	170	17	21	19	41	1.90
30257--30387	66	2.0	65	88	5	192	18	21	18	41	1.90
30266--30391	19	7.4	19	64	24	84	17	21	18	42	1.89
32242--32279	12	3.1	12	85	7	58	0	23	5	71	1.07
33308--33399	20	4.6	20	75	2	85	39	22	18	19	1.93
33613--33680	20	3.4	20	68	8	66	41	23	19	16	1.90
33726--33774	19	2.6	19	96	0	89	14	18	16	51	1.77
35360--35452	42	2.2	42	82	3	116	24	13	39	21	1.90
35350--35433	21	4.0	20	71	9	60	20	19	38	22	1.94
35817--35903	20	4.4	20	88	1	122	36	24	24	14	1.93
35797--35882	40	2.2	40	82	4	102	36	26	19	17	1.94
36534--36580	18	2.6	18	86	0	67	14	17	42	25	1.87
37898--37935	20	1.9	20	100	0	76	55	18	15	10	1.68
38219--38262	22	2.0	22	95	0	79	18	15	45	20	1.85
38915--38956	2	21.5	2	95	4	77	50	0	0	50	1.00
39315--39373	29	2.1	27	81	12	66	69	5	1	23	1.18
41682--41720	17	2.3	17	91	8	62	35	12	5	46	1.65
43346--43392	25	1.9	24	82	4	58	53	10	0	36	1.36
43410--43477	29	2.3	31	87	5	95	44	4	4	47	1.43
43457--43531	27	2.7	29	76	8	77	44	0	5	50	1.24
43503--43756	36	7.1	36	74	14	206	45	6	4	44	1.49
43558--43633	27	2.8	27	84	4	82	44	1	6	47	1.37
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43449--43700	102	2.5	102	93	3	418	46	3	4	45	1.41
43587--43643	27	2.1	28	83	9	73	40	3	7	49	1.47
43629--43786	75	2.1	77	84	3	203	43	10	3	43	1.54
43629--43827	75	2.6	75	79	10	199	44	10	3	41	1.56
46521--46781	142	1.8	142	84	3	355	26	27	21	23	1.99
71083--71144	27	2.2	27	82	8	70	70	0	6	22	1.09
71683--71712	12	2.5	12	88	0	51	66	3	23	6	1.30
73811--73877	22	3.0	22	100	0	134	26	26	26	19	1.99
74095--74154	30	2.0	31	86	3	86	35	21	6	36	1.80
74638--74680	21	2.0	21	86	0	59	16	25	27	30	1.97
74510--74658	67	2.2	67	89	1	219	17	26	27	28	1.98
80715--80781	22	3.0	22	100	0	134	26	26	26	19	1.99
81001--81060	30	2.0	31	86	3	86	35	21	6	36	1.80
81417--81571	71	2.3	67	87	4	211	17	26	27	28	1.98
81551--81593	21	2.0	21	86	0	59	16	25	27	30	1.97
82722--82838	32	3.7	32	80	2	137	35	15	19	29	1.93
82805--82873	36	1.9	36	85	5	95	34	20	18	26	1.96
84229--84615	183	2.1	184	92	2	647	42	3	9	45	1.51
87999--88126	60	2.1	60	75	5	134	32	15	15	36	1.89
92107--92137	13	2.4	13	94	0	53	51	19	0	29	1.47
94598--94638	19	2.2	19	86	4	57	36	2	2	58	1.24
96489--96531	17	2.6	16	78	10	50	62	9	4	23	1.44
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
96850--96903	5	10.8	5	97	0	72	11	40	0	48	1.39
97617--97657	15	2.7	15	92	0	64	9	65	14	9	1.46
97869--97899	7	4.4	7	100	0	62	25	16	0	58	1.38
98526--98555	2	15.0	2	100	0	60	50	0	0	50	1.00
102808--102999	90	2.1	90	92	0	323	23	19	18	37	1.94
109234--109311	22	3.6	22	72	14	65	76	1	2	19	0.96
112873--112915	21	2.0	21	86	9	59	41	13	0	44	1.44
112867--112922	19	2.8	20	75	15	53	42	10	0	46	1.38
116112--116139	14	2.0	14	100	0	56	50	7	0	42	1.30
120153--120180	7	4.0	7	100	0	56	57	0	0	42	0.99
121734--121758	12	2.1	12	100	0	50	44	0	8	48	1.32
122231--122599	158	2.4	159	83	3	446	28	17	6	47	1.72
123681--123818	64	2.2	64	88	5	199	29	18	21	29	1.97
124409--124483	2	38.5	2	94	5	136	50	0	0	49	1.00
124766--125348	291	2.0	292	93	4	1007	20	19	27	32	1.97
126246--126270	13	1.9	13	100	0	50	48	0	12	40	1.40
126269--126320	2	26.0	2	100	0	104	50	0	0	50	1.00
126780--126885	23	4.7	23	80	6	110	25	21	27	25	2.00
127991--128080	30	3.0	30	100	0	180	33	23	20	23	1.97
128082--128175	31	3.0	31	80	9	118	32	19	18	29	1.95
128082--128174	32	2.9	32	80	13	120	33	18	18	30	1.95
129040--129083	21	2.2	20	87	4	61	15	25	27	31	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
131844--131940	30	3.2	30	95	0	176	31	23	19	24	1.98
131929--132026	31	3.2	30	75	13	99	33	16	19	30	1.94
131932--132027	32	3.0	32	74	18	101	35	16	17	30	1.93
132502--132540	19	2.1	19	85	9	53	41	20	7	30	1.80
139893--139994	46	2.2	46	84	3	125	36	16	16	30	1.91
140932--140966	2	18.0	2	94	5	63	48	0	0	51	1.00
141115--141144	2	15.0	2	92	0	51	46	0	3	50	1.18
140946--141288	173	2.0	170	96	2	634	48	7	6	37	1.59
144809--145421	306	2.0	307	97	2	1171	35	19	12	32	1.89
149309--149369	14	4.3	14	81	8	70	75	0	4	19	0.98
149280--149358	9	9.2	8	72	16	52	77	0	7	15	0.98
149312--149377	26	2.5	26	85	5	78	74	0	4	21	1.00
149314--149379	4	16.2	4	80	16	50	72	0	4	22	1.02
149332--149467	69	1.9	69	80	14	154	65	1	5	27	1.24
149614--149663	2	25.5	2	95	4	93	52	0	0	48	1.00
150242--150346	37	2.8	37	86	0	156	30	14	15	40	1.87
151077--152217	106	10.9	106	88	3	1577	23	18	24	34	1.96
152599--152634	18	2.0	18	94	0	63	47	27	5	19	1.72
153041--153117	22	3.5	22	89	0	118	22	12	25	38	1.90
153728--153808	16	5.3	15	70	21	53	4	12	6	76	1.13
153724--153803	22	3.5	22	72	23	76	5	12	6	76	1.14
156661--156689	2	14.5	2	100	0	58	51	0	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
160257--160329	32	2.3	31	83	6	92	21	9	23	45	1.81
160275--160394	32	3.8	32	75	6	118	25	10	23	40	1.87
162762--162830	23	3.0	23	82	0	93	36	26	21	15	1.94
163285--163309	2	12.5	2	100	0	50	48	0	0	52	1.00
164421--164582	64	2.5	64	82	4	193	24	23	19	33	1.97
166939--166986	20	2.4	20	100	0	96	31	14	14	39	1.86
169560--169653	20	4.9	20	82	7	124	26	29	22	21	1.99
169560--169650	38	2.4	38	88	0	146	26	30	21	20	1.98
170591--170624	18	1.9	17	94	5	59	44	5	5	44	1.52
172830--172859	14	2.1	14	93	0	51	43	0	16	40	1.48

Tables:   1   2   3   4