genome.fa.s8613.2.7.7.80.10.50.1000.4.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008613.1 Hibiscus syriacus cultivar Beakdansim tig00111569_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  647085

Tables:   1   2   3   4   

This is table  4  of  4  ( 443 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
516106--516173	23	2.9	23	83	12	93	10	11	19	58	1.61
536079--536128	23	2.2	23	92	0	82	38	8	22	32	1.83
536043--536204	87	1.9	87	94	0	288	40	11	16	31	1.84
540251--541602	200	6.8	200	86	3	1415	30	14	16	39	1.88
540641--541602	398	2.4	399	88	1	1367	28	14	15	40	1.87
541787--541838	24	2.2	24	82	6	61	51	11	3	32	1.56
542521--542551	13	2.4	13	100	0	62	48	6	22	22	1.73
543194--543240	3	15.7	3	78	8	51	27	29	2	40	1.68
544395--544452	15	3.7	15	93	6	89	27	0	48	24	1.51
544795--546076	199	6.5	199	88	3	1783	27	14	15	41	1.86
544795--546076	399	3.3	399	86	4	1823	27	14	15	41	1.86
545453--546015	181	3.0	181	87	9	840	27	15	15	42	1.86
546449--546497	19	2.6	19	96	0	89	55	10	2	32	1.45
548678--548728	24	2.2	23	86	13	70	43	7	1	47	1.43
550450--551288	182	4.6	182	86	3	1093	27	15	13	43	1.84
559493--559560	21	3.2	21	89	0	100	17	26	22	33	1.96
562501--562539	17	2.4	17	95	4	71	61	5	0	33	1.18
562483--562555	26	3.0	24	77	18	78	65	2	1	30	1.15
563627--563661	2	17.5	2	100	0	70	48	0	0	51	1.00
571309--571395	6	14.8	6	81	11	56	60	0	1	37	1.04
571305--571395	24	4.0	24	81	8	93	61	0	2	36	1.08
571331--571393	16	3.8	17	85	8	67	58	0	0	41	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
571333--571375	2	21.5	2	100	0	86	51	0	0	48	1.00
575055--575106	8	7.1	7	79	16	61	0	19	1	78	0.84
575054--575106	15	3.6	15	82	9	65	0	20	1	77	0.87
575052--575107	23	2.5	22	83	11	78	0	19	1	78	0.84
584334--584426	12	7.8	12	67	9	55	47	19	13	19	1.82
584339--584426	24	3.7	24	75	6	88	46	19	13	20	1.83
584330--584423	48	2.0	48	91	0	152	47	18	13	20	1.82
588205--588249	14	3.3	13	84	9	54	66	0	2	31	1.04
588192--588238	22	2.0	23	92	8	78	68	0	4	27	1.08
588203--588254	24	2.2	22	80	16	52	63	0	3	32	1.12
588457--588484	2	14.0	2	100	0	56	50	0	0	50	1.00
594186--594214	14	2.0	15	93	6	51	27	0	0	72	0.85
595007--595057	26	2.0	26	100	0	102	39	7	3	49	1.51
595169--595204	18	1.9	19	88	5	56	27	0	2	69	1.02
597050--597214	87	1.9	87	88	7	255	35	19	20	24	1.95
597049--597246	87	2.3	87	83	8	253	34	19	20	25	1.96
597974--598046	31	2.4	31	88	0	101	27	26	12	34	1.92
598411--598441	16	1.9	16	100	0	62	6	12	22	58	1.58
602149--602258	54	2.0	54	100	0	220	31	18	9	40	1.81
605560--605627	3	22.0	3	85	11	84	39	0	0	60	0.97
605548--605623	35	2.1	36	83	13	104	36	0	0	63	0.95
605556--605628	38	1.9	38	88	5	112	39	0	0	60	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
606729--606784	22	2.5	22	77	16	62	25	3	7	64	1.35
609103--609138	14	2.6	14	86	0	54	30	13	2	52	1.55
610950--611007	22	2.6	22	81	8	64	31	12	15	41	1.84
611407--612051	113	5.7	113	97	0	1204	39	15	17	27	1.90
611867--612254	206	1.9	202	84	6	523	39	15	17	27	1.90
612516--612587	3	24.0	3	83	10	94	38	0	0	61	0.96
613692--613747	22	2.5	22	77	16	62	25	3	7	64	1.35
615116--615162	23	1.9	24	87	12	69	42	4	6	46	1.48
617258--617424	43	3.9	42	82	7	194	28	14	25	32	1.94
617258--617452	86	2.3	85	83	4	232	27	15	25	31	1.96
617249--617511	86	3.1	86	79	5	210	24	14	24	36	1.93
617393--617511	43	2.8	42	80	3	123	17	15	26	39	1.90
617929--617979	21	2.4	21	80	0	57	1	35	17	45	1.60
627120--627579	190	2.4	188	86	5	624	31	17	16	34	1.92
627418--627727	148	2.1	148	88	0	449	34	17	15	32	1.91
627527--627620	42	2.3	42	83	5	111	36	21	14	27	1.93
629647--629691	20	2.2	20	88	0	63	42	20	22	15	1.89
629656--629712	20	2.8	21	86	5	73	40	19	19	21	1.92
629817--629878	20	3.1	20	73	0	61	25	17	16	40	1.90
629783--629878	40	2.4	40	85	0	129	26	16	15	41	1.88
629783--629875	20	4.7	20	67	7	55	25	17	16	40	1.89
629894--629933	21	1.9	21	94	0	71	42	20	20	17	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
629962--630007	20	2.3	20	88	0	65	13	19	23	43	1.86
630167--630287	20	6.0	20	80	10	106	18	16	21	43	1.87
630192--630296	40	2.6	40	83	3	131	16	16	22	44	1.86
630213--630296	20	4.2	20	87	0	114	15	15	23	45	1.84
633008--633083	13	5.3	13	75	17	62	15	43	22	18	1.88
632987--633062	18	4.6	18	76	17	92	17	48	21	13	1.80
632993--633068	31	2.5	31	93	0	134	15	47	21	15	1.82
633025--633083	8	7.6	8	71	21	54	15	42	23	18	1.88
633044--633090	15	3.3	14	88	5	60	17	38	23	21	1.93
634379--634413	18	1.9	18	88	0	52	54	0	17	28	1.43
638183--638227	18	2.6	18	92	3	74	17	48	22	11	1.78
638209--638261	8	7.5	8	73	26	57	15	39	24	20	1.91
638204--638261	26	2.1	27	93	6	100	15	41	24	18	1.89
638204--638261	13	4.3	13	88	4	80	15	41	24	18	1.89
639554--639588	18	1.9	18	88	0	52	54	0	17	28	1.43
645412--645442	16	1.9	16	93	0	53	41	19	9	29	1.83
646214--646345	71	1.9	71	84	9	180	57	10	6	25	1.55

Tables:   1   2   3   4

The End!