genome.fa.s8624.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008624.1 Hibiscus syriacus cultivar Beakdansim tig00111587_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  642794

Tables:   1   2   3   4   

This is table  2  of  4  ( 420 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
132980--133202	30	7.4	31	73	14	146	54	3	6	35	1.43
132980--133202	29	7.4	30	73	12	154	54	3	6	35	1.43
133508--133533	2	13.0	2	100	0	52	50	0	0	50	1.00
133988--134035	21	2.3	21	96	0	87	29	33	12	25	1.92
134053--134091	21	1.9	21	84	5	53	38	10	20	30	1.86
134130--134169	20	2.0	20	90	4	64	35	30	15	20	1.93
134922--134961	20	2.0	21	85	9	57	57	0	0	42	0.98
134928--135007	27	2.9	27	70	5	63	51	2	3	42	1.33
135047--135304	7	37.0	7	99	0	509	28	0	0	71	0.86
135310--135411	42	2.6	37	85	10	125	43	0	3	51	1.26
135482--135529	22	2.1	23	92	3	80	47	0	4	47	1.21
135645--135688	24	2.0	23	82	13	56	47	13	2	36	1.56
142671--142749	29	2.7	29	79	18	85	51	1	5	41	1.31
144141--144220	40	2.0	40	100	0	160	32	2	12	52	1.52
145141--145181	16	2.6	16	88	3	57	36	12	21	29	1.90
145233--145341	23	4.6	23	90	4	101	22	15	18	44	1.87
145258--145341	23	3.7	23	96	0	150	20	14	19	46	1.84
145381--145436	22	2.5	22	97	0	103	28	25	21	25	1.99
145585--145642	29	1.9	31	89	6	93	46	5	15	32	1.68
149934--150178	57	4.3	56	75	2	188	34	15	20	29	1.94
150060--150180	56	2.1	57	84	1	154	31	16	20	31	1.95
158675--158746	37	1.9	37	85	0	99	38	16	6	37	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
158883--158907	2	12.5	2	100	0	50	0	48	0	52	1.00
161443--161578	31	4.4	31	77	10	134	56	11	13	17	1.67
161474--161611	62	2.2	62	94	0	249	55	10	16	17	1.69
161503--161609	31	3.5	31	78	10	137	55	9	18	16	1.68
163009--163170	64	2.5	64	83	4	175	33	22	17	25	1.96
167485--167606	64	1.9	64	82	0	154	36	20	16	27	1.94
173027--173088	3	20.7	3	96	0	115	32	0	1	66	1.02
181394--181438	20	2.5	18	80	19	58	24	22	11	42	1.86
181403--181442	20	2.1	19	95	4	71	22	25	10	42	1.84
194544--194586	22	2.0	22	90	0	68	23	44	11	20	1.84
197114--197191	21	3.7	21	84	6	97	24	33	17	24	1.97
198593--198625	13	2.4	14	95	5	59	30	0	21	48	1.50
202239--202338	40	2.5	40	77	4	103	39	13	18	30	1.88
202893--202936	23	1.9	23	90	0	70	50	15	15	18	1.79
204515--204554	19	2.1	19	86	9	55	45	2	0	52	1.14
212089--212213	31	4.0	31	89	2	180	38	23	17	20	1.93
216612--216784	31	5.6	31	94	1	285	40	20	17	20	1.92
219931--219982	23	2.2	24	89	3	79	44	9	26	19	1.81
222780--222861	30	2.7	30	83	3	94	63	15	2	18	1.42
222767--222905	15	9.3	15	71	9	59	63	12	2	21	1.41
224302--224368	23	2.9	23	97	0	125	29	20	28	20	1.98
229389--229491	23	4.5	23	82	0	125	27	22	27	23	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
230576--230623	17	2.7	20	72	21	52	54	18	2	25	1.55
236653--236696	17	2.5	17	81	3	52	65	2	2	29	1.16
246469--246494	2	13.0	2	100	0	52	50	0	0	50	1.00
246895--246920	13	2.0	13	100	0	52	69	0	0	30	0.89
252997--253060	31	2.1	31	96	0	119	39	17	17	26	1.91
254213--254280	31	2.2	31	81	2	84	42	11	13	32	1.80
254683--254740	21	2.8	20	82	7	62	70	1	1	25	1.06
254703--254735	13	2.5	13	95	5	57	75	0	0	24	0.80
259103--259132	2	15.0	2	92	0	51	46	0	3	50	1.18
259315--259360	3	15.3	3	82	17	60	34	0	0	65	0.93
259319--259368	15	3.3	15	94	5	84	38	0	0	62	0.96
259315--259366	18	2.9	18	94	2	88	36	0	0	63	0.95
259833--259863	15	2.1	14	94	5	53	12	0	3	83	0.75
263955--264141	91	2.0	93	84	8	247	27	18	9	44	1.81
266565--266603	21	1.9	20	84	5	51	7	33	10	48	1.66
270656--271106	51	8.6	55	91	2	293	26	26	16	30	1.96
270770--271116	51	6.8	51	94	0	586	26	28	14	30	1.95
271416--271448	17	1.9	17	88	11	50	30	27	3	39	1.72
272468--272593	27	4.6	27	73	16	82	5	19	0	74	1.06
272496--272588	20	4.7	20	76	17	79	5	18	1	75	1.05
272496--272588	21	4.6	21	75	16	74	5	18	1	75	1.05
272506--272590	10	8.7	10	72	21	65	5	17	1	75	1.07
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
272506--272603	20	5.1	20	76	17	84	6	17	1	75	1.06
272556--272603	10	5.0	10	80	16	57	4	16	0	79	0.89
272488--272603	39	3.0	37	73	13	94	5	18	0	75	1.05
282242--282337	45	2.1	46	86	7	133	38	20	11	29	1.88
289249--289307	25	2.4	25	85	0	82	18	25	38	16	1.92
289788--290328	140	3.9	139	84	6	727	25	20	17	36	1.95
290969--291085	55	2.1	56	81	4	132	38	17	10	33	1.84
293131--293210	15	5.1	16	80	16	87	1	17	0	81	0.76
293131--293210	32	2.5	31	82	11	99	1	17	0	81	0.76
293139--293234	7	13.6	7	75	13	74	3	14	2	80	0.93
293144--293220	17	4.7	16	84	9	75	3	15	0	80	0.85
293717--293950	65	3.7	65	79	12	229	32	20	19	27	1.97
293898--293944	17	2.7	17	96	3	85	25	25	21	27	1.99
293904--293944	8	4.8	9	79	11	50	24	24	21	29	1.99
303241--303356	2	58.0	2	100	0	232	50	0	0	50	1.00
304325--304364	21	2.0	20	85	5	53	37	12	12	37	1.81
307695--307753	3	19.7	3	92	0	100	32	1	0	66	1.02
307749--307789	15	2.9	14	89	7	64	60	0	0	39	0.96
307749--307789	14	2.9	15	92	7	68	60	0	0	39	0.96
308197--308237	19	2.2	19	86	8	57	68	4	24	2	1.22
320636--320681	19	2.6	17	81	15	58	30	6	13	50	1.66
321438--322026	82	7.4	81	90	6	881	26	12	23	37	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
321438--322026	160	3.7	161	92	5	886	26	12	23	37	1.91
321438--322026	242	2.5	239	89	7	873	26	12	23	37	1.91
322739--323018	110	2.6	109	91	7	462	38	13	18	29	1.89
323079--323127	26	1.9	25	84	12	64	55	6	24	14	1.62
323064--323383	116	2.8	113	83	10	397	38	12	19	29	1.88
322760--323331	317	1.8	304	87	7	853	37	13	19	28	1.90
323589--323640	3	17.7	3	84	11	72	32	0	0	67	0.91
323600--323651	23	2.3	23	86	6	70	38	0	0	61	0.96
323639--323672	14	2.4	15	85	14	54	61	0	0	38	0.96
324071--324102	15	2.1	15	94	0	55	78	6	15	0	0.95
324070--324139	22	3.6	19	75	17	63	75	7	17	0	1.01
324333--324627	148	2.0	146	93	5	506	23	24	29	22	1.99
331485--331551	27	2.5	26	83	7	82	44	1	0	53	1.09
331464--331534	24	2.9	24	80	2	70	45	2	1	50	1.25
334636--334691	27	2.0	30	86	10	82	39	5	0	55	1.23
335280--335580	150	2.0	150	96	3	554	17	30	28	23	1.97
344183--344348	82	2.0	82	98	0	323	28	19	18	33	1.95
345740--345908	75	2.3	75	90	2	261	37	5	2	54	1.38
349217--349380	20	8.2	20	73	11	97	41	19	16	22	1.90
349233--349369	40	3.4	41	76	15	133	39	20	16	23	1.92
349195--349380	100	1.9	100	94	0	327	39	19	16	23	1.92
349886--349938	20	2.7	20	96	0	97	9	18	22	49	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
349879--349949	20	3.5	20	86	0	79	14	15	19	50	1.77
351906--351947	12	3.5	12	83	0	57	28	2	2	66	1.16
352090--352187	21	4.7	21	72	9	83	26	34	16	22	1.95
352086--352188	42	2.4	43	75	13	115	27	34	15	22	1.94
353567--353707	67	2.2	62	86	8	187	30	0	17	51	1.51
354096--354182	39	2.2	39	97	0	165	19	14	18	47	1.83
357774--357814	20	2.0	20	100	0	82	34	9	19	36	1.85
358974--359017	21	2.2	20	87	4	61	31	27	25	15	1.96
359842--359937	32	3.0	32	79	14	126	29	17	18	34	1.94
359929--360021	30	3.1	30	95	1	161	20	22	26	30	1.98

Tables:   1   2   3   4